Detail Information

Basic Information:


  VIRBase ID:  

VHID00138724

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H3-5p:           DDOST:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H3-5p DDOST
miRBase
Accession/Entrez ID		 MIMAT0015279 1650
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - AGER1//CDG1R//GATD6//OKSWcl45//OST//OST48//WBP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DDOST
chr1:20978391(-) A-I      3'UTR
chr1:20978574(-) A-I      3'UTR
chr1:20978354(-) A-I      3'UTR
chr1:20978356(-) A-I      3'UTR
chr1:20978423(-) A-I      3'UTR
chr1:20978371(-) A-I      3'UTR
chr1:20978395(-) A-I      3'UTR
chr1:20978613(-) A-I      3'UTR
chr1:20978404(-) A-I      3'UTR
chr1:20978502(-) A-I      3'UTR
chr1:20981449(-) A-I      intronic
chr1:20978499(-) A-I      3'UTR
chr1:20978490(-) A-I      3'UTR
chr1:20978497(-) A-I      3'UTR
chr1:20978486(-) A-I      3'UTR
chr1:20978430(-) A-I      3'UTR
chr1:20978411(-) A-I      3'UTR
chr1:20978357(-) A-I      3'UTR
chr1:20978515(-) A-I      3'UTR
chr1:20978552(-) A-I      3'UTR
chr1:20978582(-) A-I      3'UTR
chr1:20978585(-) A-I      3'UTR
chr1:20985434(-) A-I      intronic
chr1:20985391(-) A-I      intronic
chr1:20978523(-) A-I      3'UTR
chr1:20978498(-) A-I      3'UTR
chr1:20985390(-) A-I      intronic
chr1:20978496(-) A-I      3'UTR
chr1:20978483(-) A-I      3'UTR
chr1:20978457(-) A-I      3'UTR
chr1:20978451(-) A-I      3'UTR
chr1:20978384(-) A-I      3'UTR
chr1:20978487(-) A-I      3'UTR
chr1:20978513(-) A-I      3'UTR
chr1:20978590(-) A-I      3'UTR
chr1:20985464(-) A-I      intronic
chr1:20978366(-) A-I      3'UTR
chr1:20978381(-) A-I      3'UTR
chr1:20978564(-) A-I      3'UTR
chr1:20978591(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DDOST
chr1:20978381(-) A-I exon 3'UTR    15342557
chr1:20978410(-) A-I exon 3'UTR    15342557
chr1:20978451(-) A-I exon 3'UTR    15342557
chr1:20978457(-) A-I exon 3'UTR    15342557
chr1:20978483(-) A-I exon 3'UTR    15342557
chr1:20978487(-) A-I exon 3'UTR    15342557
chr1:20978498(-) A-I exon 3'UTR    15342557
chr1:20978513(-) A-I exon 3'UTR    15342557
chr1:20978516(-) A-I exon 3'UTR    15342557
chr1:20978523(-) A-I exon 3'UTR    15342557
chr1:20978564(-) A-I exon 3'UTR    15342557
chr1:20978590(-) A-I exon 3'UTR    15342557
chr1:20978384(-) A-G exon 3'UTR    22484847
chr1:20978451(-) A-G exon 3'UTR    22484847
chr1:20978457(-) A-G exon 3'UTR    22484847
chr1:20978483(-) A-G exon 3'UTR    22484847
chr1:20978523(-) A-G exon 3'UTR    22484847
chr1:20978564(-) A-G exon 3'UTR    22484847
chr1:20978590(-) A-G exon 3'UTR    22484847
chr1:20978591(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DDOST
chr1:20978269-20978270(-) m6A 3'UTR       24981863
chr1:20978344-20978345(-) m6A 3'UTR       24209618//24981863
chr1:20978512-20978513(-) m6A 3'UTR       24209618//27773535
chr1:20978535-20978536(-) m6A 3'UTR       24209618//27773535
chr1:20987719-20987720(-) m6A CDS//exon       22575960
chr1:20987739-20987740(-) m6A CDS//exon       22575960
chr1:20987762-20987763(-) m6A CDS//exon       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DDOST
Cytosol HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H3-5p
Interactor2: DDOST

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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