Basic Information:

  VIRBase ID:  

VHID00136476

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H1-3p:  MIMAT0015220          TRIM3:  NM_006458     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H1-3p	TRIM3
miRBase Accession/Entrez ID	MIMAT0015220	10612
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BERP//HAC1//RNF22//RNF97

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM3	chr11:6491694(-) A-I      intronic chr11:6491696(-) A-I      intronic chr11:6491712(-) A-I      intronic chr11:6483735(-) A-I      intronic chr11:6482363(-) A-I      intronic chr11:6488964(-) A-I      intronic chr11:6483673(-) A-I      intronic chr11:6491749(-) A-I      intronic chr11:6484313(-) A-I      intronic chr11:6484327(-) A-I      intronic chr11:6482417(-) A-I      intronic chr11:6483802(-) A-I      intronic chr11:6483892(-) A-I      intronic chr11:6484102(-) A-I      intronic chr11:6484014(-) A-I      intronic chr11:6475526(-) A-I      intronic chr11:6485892(-) A-I      intronic chr11:6488829(-) A-I      intronic chr11:6488739(-) A-I      intronic chr11:6484323(-) A-I      intronic chr11:6482276(-) A-I      intronic chr11:6489350(-) A-I      intronic chr11:6484287(-) A-I      intronic chr11:6488840(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TRIM3	chr11:6475526(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM3	chr11:6469887-6469888(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr11:6469937-6469938(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr11:6469952-6469953(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr11:6470051-6470052(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535 chr11:6470174-6470175(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:6470204-6470205(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:6470224-6470225(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:6470359-6470360(-) m6A CDS//exon       22608085 chr11:6470859-6470860(-) m6A exon//intron       27773535 chr11:6470907-6470908(-) m6A exon//intron       27773535 chr11:6470916-6470917(-) m6A exon//intron       27773535 chr11:6470984-6470985(-) m6A exon//intron       27773535 chr11:6471042-6471043(-) m6A exon//intron       27773535 chr11:6471064-6471065(-) m6A exon//intron       27773535 chr11:6471081-6471082(-) m6A exon//intron       27773535 chr11:6471134-6471135(-) m6A exon//intron       27773535 chr11:6471140-6471141(-) m6A exon//intron       27773535 chr11:6471278-6471279(-) m6A exon//intron       27773535 chr11:6471296-6471297(-) m6A exon//intron       27773535 chr11:6471334-6471335(-) m6A exon//intron       27773535 chr11:6471365-6471366(-) m6A exon//intron       27773535 chr11:6471372-6471373(-) m6A exon//intron       27773535 chr11:6471428-6471429(-) m6A exon//intron       27773535 chr11:6471442-6471443(-) m6A exon//intron       27773535 chr11:6471481-6471482(-) m6A exon//intron       27773535 chr11:6477687-6477688(-) m6A CDS//exon//intron       - chr11:6477737-6477738(-) m6A CDS//exon//intron       24284625//24981863//27371828 chr11:6477816-6477817(-) m6A CDS//exon       24284625//25456834//24981863//27371828//22608085 chr11:6477909-6477910(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr11:6478064-6478065(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr11:6478217-6478218(-) m6A CDS//exon       24209618//27371828//27773536 chr11:6478239-6478240(-) m6A CDS//exon       24209618//27773536 chr11:6478531-6478532(-) m6A CDS//exon       24209618//27773536 chr11:6478548-6478549(-) m6A CDS//exon       24209618//27773536 chr11:6478601-6478602(-) m6A CDS//exon       24209618 chr11:6486878-6486879(-) m6A CDS//intron       - chr11:6486908-6486909(-) m6A CDS//intron       24284625 chr11:6494355-6494356(-) m6A 5'UTR//intron       24284625 chr11:6494365-6494366(-) m6A 5'UTR//intron       24284625 chr11:6494471-6494472(-) m6A 5'UTR//intron       24981863 chr11:6495134-6495135(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM3	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H1-3p
Interactor2: TRIM3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg