Basic Information:

  VIRBase ID:  

VHID00134914

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H18:  MIMAT0014696          VSTM4:  NM_144984     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H18	VSTM4
miRBase Accession/Entrez ID	MIMAT0014696	196740
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C10orf72

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VSTM4	chr10:50312172(-) A-I      intronic chr10:50312178(-) A-I      intronic chr10:50310288(-) A-I      3'UTR chr10:50310363(-) A-I      3'UTR chr10:50310355(-) A-I      3'UTR chr10:50259616(-) A-I      intronic chr10:50259579(-) A-I      intronic chr10:50259609(-) A-I      intronic chr10:50310281(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VSTM4	chr10:50226598-50226599(-) m6A 3'UTR       25456834//24981863//22608085 chr10:50226655-50226656(-) m6A 3'UTR       25456834//24981863//22608085 chr10:50226670-50226671(-) m6A 3'UTR       25456834//24981863//22608085 chr10:50226679-50226680(-) m6A 3'UTR       25456834//24981863//22608085 chr10:50226777-50226778(-) m6A 3'UTR       25456834//22608085 chr10:50226982-50226983(-) m6A 3'UTR       - chr10:50227000-50227001(-) m6A 3'UTR       24981863 chr10:50227039-50227040(-) m6A 3'UTR       24981863 chr10:50227048-50227049(-) m6A 3'UTR       24981863 chr10:50227064-50227065(-) m6A 3'UTR       24981863//22608085 chr10:50227119-50227120(-) m6A 3'UTR       22608085 chr10:50227404-50227405(-) m6A 3'UTR       25456834 chr10:50227484-50227485(-) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VSTM4	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H18
Interactor2: VSTM4

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg