Basic Information:

  VIRBase ID:  

VHID00134253

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H18:  MIMAT0014696          GPRC5C:  NM_018653     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H18	GPRC5C
miRBase Accession/Entrez ID	MIMAT0014696	55890
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RAIG-3//RAIG3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPRC5C	chr17:72437336(+) A-I      intronic chr17:72437337(+) A-I      intronic chr17:72437840(+) A-I      intronic chr17:72434529(+) A-I      intronic chr17:72437379(+) A-I      intronic chr17:72437820(+) A-I      intronic chr17:72437883(+) A-I      intronic chr17:72430958(+) A-I      intronic chr17:72438241(+) A-I      intronic chr17:72434600(+) A-I      intronic chr17:72437224(+) A-I      intronic chr17:72437888(+) A-I      intronic chr17:72437856(+) A-I      intronic chr17:72441213(+) A-I      intronic chr17:72438242(+) A-I      intronic chr17:72437230(+) A-I      intronic chr17:72438195(+) A-I      intronic chr17:72437238(+) A-I      intronic chr17:72430800(+) A-I      intronic chr17:72437180(+) A-I      intronic chr17:72437780(+) A-I      intronic chr17:72437167(+) A-I      intronic chr17:72437829(+) A-I      intronic chr17:72431052(+) A-I      intronic chr17:72437305(+) A-I      intronic chr17:72434738(+) A-I      intronic chr17:72434237(+) A-I      intronic chr17:72441224(+) A-I      intronic chr17:72437269(+) A-I      intronic chr17:72434243(+) A-I      intronic chr17:72430847(+) A-I      intronic chr17:72433146(+) A-I      intronic chr17:72437287(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPRC5C	chr17:72427137-72427138(+) m6A 5'UTR//intron       24981863 chr17:72427151-72427152(+) m6A 5'UTR//intron       24284625//24981863 chr17:72427282-72427283(+) m6A 5'UTR//intron       24981863 chr17:72427460-72427461(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427489-72427490(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427512-72427513(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427568-72427569(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427585-72427586(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427590-72427591(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427609-72427610(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427669-72427670(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427689-72427690(+) m6A 5'UTR//intron       24284625//25456834//24981863//22608085 chr17:72427720-72427721(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72427749-72427750(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72427826-72427827(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72427846-72427847(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72427918-72427919(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72427962-72427963(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:72428230-72428231(+) m6A CDS//intron       24284625//24981863 chr17:72429840-72429841(+) m6A 5'UTR//intron       24981863 chr17:72429879-72429880(+) m6A 5'UTR//intron       25456834//24981863 chr17:72435885-72435886(+) m6A 5'UTR//CDS//intron       24284625//25456834//24981863 chr17:72435950-72435951(+) m6A CDS//intron       24284625//25456834//24981863 chr17:72436153-72436154(+) m6A CDS//intron       24284625//24981863//22608085 chr17:72436179-72436180(+) m6A CDS//intron       24284625//24981863//22608085 chr17:72436203-72436204(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr17:72436537-72436538(+) m6A CDS//intron       24284625//24981863 chr17:72436858-72436859(+) m6A 5'UTR//CDS//intron       24284625 chr17:72436890-72436891(+) m6A CDS//intron       24284625 chr17:72436933-72436934(+) m6A CDS//intron       24284625 chr17:72442939-72442940(+) m6A exon//intron       - chr17:72442966-72442967(+) m6A exon//intron       - chr17:72443075-72443076(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:72443129-72443130(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:72443147-72443148(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:72443162-72443163(+) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085 chr17:72443215-72443216(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22608085 chr17:72443234-72443235(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22608085 chr17:72445639-72445640(+) m6A 3'UTR//exon//intron       25456834//24981863 chr17:72446044-72446045(+) m6A exon//intron       24981863 chr17:72446384-72446385(+) m6A exon//intron       - chr17:72446493-72446494(+) m6A exon//intron       25456834//24981863 chr17:72446514-72446515(+) m6A exon//intron       25456834//24981863 chr17:72446529-72446530(+) m6A exon//intron       25456834//24981863 chr17:72446547-72446548(+) m6A exon//intron       25456834//24981863 chr17:72446556-72446557(+) m6A exon//intron       25456834//24981863 chr17:72446586-72446587(+) m6A exon//intron       25456834//24981863 chr17:72446620-72446621(+) m6A exon//intron       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPRC5C	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H18
Interactor2: GPRC5C

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg