Basic Information:

  VIRBase ID:  

VHID00134014

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H18:  MIMAT0014696          CACYBP:  NM_014412     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H18	CACYBP
miRBase Accession/Entrez ID	MIMAT0014696	27101
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GIG5//PNAS-107//S100A6BP//SIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CACYBP	chr1:174978796(+) A-I      intronic chr1:174978762(+) A-I      intronic chr1:174972520(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CACYBP	chr1:174972504(+) T-C intron -    22484847 chr1:174972520(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CACYBP	chr1:174968572-174968573(+) m6A 5'UTR       24981863 chr1:174968599-174968600(+) m6A 5'UTR       24981863 chr1:174968615-174968616(+) m6A 5'UTR//exon       24981863 chr1:174968724-174968725(+) m6A 5'UTR//exon       - chr1:174968812-174968813(+) m6A 5'UTR//exon       24981863 chr1:174968936-174968937(+) m6A 5'UTR//intron       24981863 chr1:174968972-174968973(+) m6A 5'UTR//intron       24981863 chr1:174969294-174969295(+) m6A 5'UTR//exon//intron       22575960 chr1:174969699-174969700(+) m6A 5'UTR//intron       - chr1:174973845-174973846(+) m6A 5'UTR//CDS//exon       27773535 chr1:174973858-174973859(+) m6A 5'UTR//CDS//exon       27773535 chr1:174973892-174973893(+) m6A CDS//exon       27773535 chr1:174973910-174973911(+) m6A CDS//exon       27773535 chr1:174976289-174976290(+) m6A CDS//exon       27773535 chr1:174976302-174976303(+) m6A CDS//exon       27773535 chr1:174977750-174977751(+) m6A CDS//exon       24981863//27773535 chr1:174977790-174977791(+) m6A CDS//exon       24981863//27773535 chr1:174977948-174977949(+) m6A exon//intron       24981863//27773535 chr1:174979080-174979081(+) m6A CDS       24981863//27773535//22608085 chr1:174979152-174979153(+) m6A CDS       24284625//24981863//27773535//22608085 chr1:174979201-174979202(+) m6A CDS       24284625//24981863//27773535//22608085 chr1:174979216-174979217(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:174979236-174979237(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:174979397-174979398(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CACYBP	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H18
Interactor2: CACYBP

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg