Basic Information:

  VIRBase ID:  

VHID00133859

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H18:  MIMAT0014696          TTC39A:  NM_001297665     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H18	TTC39A
miRBase Accession/Entrez ID	MIMAT0014696	22996
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf34//DEME-6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTC39A	chr1:51786398(-) A-I      intronic chr1:51786341(-) A-I      intronic chr1:51790887(-) A-I      intronic chr1:51790866(-) A-I      intronic chr1:51790684(-) A-I      intronic chr1:51786367(-) A-I      intronic chr1:51783340(-) A-I      intronic chr1:51790814(-) A-I      intronic chr1:51785460(-) A-I      intronic chr1:51790919(-) A-I      intronic chr1:51785530(-) A-I      intronic chr1:51786198(-) A-I      intronic chr1:51790404(-) A-I      intronic chr1:51793852(-) A-I      intronic chr1:51790764(-) A-I      intronic chr1:51779453(-) A-I      intronic chr1:51757772(-) A-I      intronic chr1:51785500(-) A-I      intronic chr1:51785556(-) A-I      intronic chr1:51779491(-) A-I      intronic chr1:51773919(-) A-I      intronic chr1:51785491(-) A-I      intronic chr1:51779452(-) A-I      intronic chr1:51786400(-) A-I      intronic chr1:51790804(-) A-I      intronic chr1:51757655(-) A-I      intronic chr1:51779505(-) A-I      intronic chr1:51786371(-) A-I      intronic chr1:51803227(-) A-I      intronic chr1:51783322(-) A-I      intronic chr1:51757672(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTC39A	chr1:51763001(-) A-I intron -    15342557 chr1:51763104(-) A-I intron -    15342557 chr1:51763129(-) A-I intron -    15342557 chr1:51765531(-) A-I intron -    15342557 chr1:51765543(-) A-I intron -    15342557 chr1:51765564(-) A-I intron -    15342557 chr1:51765589(-) A-I intron -    15342557 chr1:51766196(-) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTC39A	chr1:51753276-51753277(-) m6A 3'UTR       27773535 chr1:51753495-51753496(-) m6A 3'UTR       24981863 chr1:51753549-51753550(-) m6A 3'UTR       24981863 chr1:51753771-51753772(-) m6A 3'UTR//exon       24981863//27773535 chr1:51753786-51753787(-) m6A 3'UTR//exon       24981863//27773535 chr1:51753794-51753795(-) m6A 3'UTR//exon       24981863//27773535 chr1:51753800-51753801(-) m6A 3'UTR//exon       24981863//27773535 chr1:51753865-51753866(-) m6A CDS//exon       24209618//24981863//27773535 chr1:51753917-51753918(-) m6A CDS//exon       24209618//27773535 chr1:51753946-51753947(-) m6A CDS//exon       27773535 chr1:51754527-51754528(-) m6A CDS//exon       27773535 chr1:51754549-51754550(-) m6A CDS//exon       27773535 chr1:51761282-51761283(-) m6A 3'UTR//intron       27773535 chr1:51761308-51761309(-) m6A 3'UTR//intron       27773535 chr1:51761345-51761346(-) m6A 3'UTR//intron       27773535 chr1:51761359-51761360(-) m6A 3'UTR//intron       27773535 chr1:51767066-51767067(-) m6A 3'UTR//exon//intron       27773535 chr1:51767074-51767075(-) m6A 3'UTR//exon//intron       27773535 chr1:51767086-51767087(-) m6A 3'UTR//exon//intron       27773535 chr1:51767093-51767094(-) m6A 3'UTR//exon//intron       27773535 chr1:51767110-51767111(-) m6A 3'UTR//exon//intron       27773535 chr1:51767133-51767134(-) m6A 3'UTR//intron       27773535 chr1:51767159-51767160(-) m6A 3'UTR//intron       27773535 chr1:51767183-51767184(-) m6A 3'UTR//intron       27773535 chr1:51768190-51768191(-) m6A CDS//exon       - chr1:51787443-51787444(-) m6A CDS       27773536 chr1:51787464-51787465(-) m6A 5'UTR//CDS       27773536 chr1:51787810-51787811(-) m6A CDS//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTC39A	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H18
Interactor2: TTC39A

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg