Basic Information:

  VIRBase ID:  

VHID00133089

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H18:  MIMAT0014696          ELK1:  NM_001114123     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H18	ELK1
miRBase Accession/Entrez ID	MIMAT0014696	2002
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ELK1	chrX:47494988-47494989(-) m6A 3'UTR       27773535 chrX:47495035-47495036(-) m6A 3'UTR       27773535 chrX:47495059-47495060(-) m6A 3'UTR       27773535 chrX:47495104-47495105(-) m6A 3'UTR       27773535 chrX:47495156-47495157(-) m6A 3'UTR       27773535 chrX:47496049-47496050(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chrX:47496132-47496133(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chrX:47496150-47496151(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chrX:47497229-47497230(-) m6A CDS//intron       24284625//27371828//27773536 chrX:47497239-47497240(-) m6A CDS//intron       24284625//27371828//27773536 chrX:47497282-47497283(-) m6A CDS//intron       27371828//27773536 chrX:47497360-47497361(-) m6A CDS//intron       27371828//27773536 chrX:47497430-47497431(-) m6A CDS//intron       - chrX:47498573-47498574(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22575960 chrX:47498654-47498655(-) m6A CDS//intron       24284625//27773535//27371828//22575960 chrX:47500683-47500684(-) m6A CDS       24284625//27773535//27371828//22575960 chrX:47500688-47500689(-) m6A CDS       24284625//27773535//27371828//22575960 chrX:47500761-47500762(-) m6A CDS       24284625//27773535//27371828 chrX:47500835-47500836(-) m6A CDS       24284625//27371828 chrX:47508366-47508367(-) m6A exon//intron       24284625//27371828 chrX:47509408-47509409(-) m6A 5'UTR//exon//intron       24981863//27371828 chrX:47509911-47509912(-) m6A 5'UTR//exon       24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ELK1	Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H18
Interactor2: ELK1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg