Basic Information:

  VIRBase ID:  

VHID00132649

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          CCDC88B:  NM_032251     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	CCDC88B
miRBase Accession/Entrez ID	MIMAT0014695	283234
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BRLZ//CCDC88//gipie//HKRP3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC88B	chr11:64114006(+) A-I      intronic chr11:64113303(+) A-I      intronic chr11:64113405(+) A-I      intronic chr11:64113398(+) A-I      intronic chr11:64114119(+) A-I      intronic chr11:64120592(+) A-I      Syn:Leu->Leu chr11:64115363(+) A-I      intronic chr11:64113323(+) A-I      intronic chr11:64115361(+) A-I      intronic chr11:64114406(+) A-I      intronic chr11:64114396(+) A-I      intronic chr11:64113440(+) A-I      intronic chr11:64113217(+) A-I      intronic chr11:64113328(+) A-I      intronic chr11:64113332(+) A-I      intronic chr11:64113327(+) A-I      intronic chr11:64115344(+) A-I      intronic chr11:64113366(+) A-I      intronic chr11:64118243(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC88B	chr11:64120592(+) A-I exon CDS    15342557 chr11:64122883(+) A-I intron -    15342557 chr11:64123536(+) A-I intron -    15342557 chr11:64123558(+) A-I intron -    15342557 chr11:64123582(+) A-I intron -    15342557 chr11:64123586(+) A-I intron -    15342557 chr11:64123596(+) A-I intron -    15342557 chr11:64123598(+) A-I intron -    15342557 chr11:64123623(+) A-I intron -    15342557 chr11:64123651(+) A-I intron -    15342557 chr11:64123680(+) A-I intron -    15342557 chr11:64123692(+) A-I intron -    15342557 chr11:64123705(+) A-I intron -    15342557 chr11:64123811(+) A-I intron -    15342557 chr11:64123816(+) A-I intron -    15342557 chr11:64123820(+) A-I intron -    15342557 chr11:64123825(+) A-I intron -    15342557 chr11:64123838(+) A-I intron -    15342557 chr11:64123842(+) A-I intron -    15342557 chr11:64123849(+) A-I intron -    15342557 chr11:64123854(+) A-I intron -    15342557 chr11:64123859(+) A-I intron -    15342557 chr11:64123860(+) A-I intron -    15342557 chr11:64123861(+) A-I intron -    15342557 chr11:64123889(+) A-I intron -    15342557 chr11:64123898(+) A-I intron -    15342557 chr11:64123906(+) A-I intron -    15342557 chr11:64123924(+) A-I intron -    15342557 chr11:64123925(+) A-I intron -    15342557 chr11:64123934(+) A-I intron -    15342557 chr11:64123938(+) A-I intron -    15342557 chr11:64123951(+) A-I intron -    15342557 chr11:64123957(+) A-I intron -    15342557 chr11:64123977(+) A-I intron -    15342557 chr11:64113327(+) A-G intron -    22484847 chr11:64113332(+) A-G intron -    22484847 chr11:64113366(+) A-G intron -    22484847 chr11:64123898(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC88B	chr11:64107769-64107770(+) m6A CDS//exon       - chr11:64108086-64108087(+) m6A CDS//exon       - chr11:64108115-64108116(+) m6A CDS//exon       - chr11:64109791-64109792(+) m6A CDS//exon       - chr11:64110010-64110011(+) m6A CDS//exon       - chr11:64111006-64111007(+) m6A CDS//exon       - chr11:64111317-64111318(+) m6A CDS//exon       - chr11:64111333-64111334(+) m6A CDS//exon       - chr11:64111496-64111497(+) m6A CDS//exon       - chr11:64111531-64111532(+) m6A CDS//exon       25456834 chr11:64111604-64111605(+) m6A CDS//exon       25456834 chr11:64111625-64111626(+) m6A CDS//exon       25456834//24981863 chr11:64111673-64111674(+) m6A CDS//exon       25456834 chr11:64111715-64111716(+) m6A CDS//exon       25456834 chr11:64111730-64111731(+) m6A CDS//exon       25456834 chr11:64111765-64111766(+) m6A CDS//exon       25456834 chr11:64111846-64111847(+) m6A CDS//exon       25456834 chr11:64111882-64111883(+) m6A CDS//exon       25456834//24981863 chr11:64111938-64111939(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112012-64112013(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112024-64112025(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112037-64112038(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112087-64112088(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112103-64112104(+) m6A CDS//exon       25456834//24981863//27371828//22608085 chr11:64112288-64112289(+) m6A CDS//exon       27371828 chr11:64116507-64116508(+) m6A CDS//intron       - chr11:64116842-64116843(+) m6A CDS//exon       - chr11:64117104-64117105(+) m6A CDS//exon       - chr11:64117358-64117359(+) m6A exon//intron       25456834 chr11:64117363-64117364(+) m6A exon//intron       25456834 chr11:64117549-64117550(+) m6A exon//intron       - chr11:64117572-64117573(+) m6A exon//intron       - chr11:64118163-64118164(+) m6A exon//intron       - chr11:64118691-64118692(+) m6A CDS//exon       - chr11:64118794-64118795(+) m6A exon//intron       - chr11:64119700-64119701(+) m6A CDS//exon       24284625//27371828 chr11:64119731-64119732(+) m6A CDS//exon       24284625//27371828 chr11:64119783-64119784(+) m6A CDS//exon       24284625//27371828 chr11:64119803-64119804(+) m6A CDS//exon       - chr11:64120478-64120479(+) m6A exon//intron       - chr11:64120485-64120486(+) m6A exon//intron       - chr11:64120677-64120678(+) m6A CDS//exon       - chr11:64120766-64120767(+) m6A exon//intron       - chr11:64120859-64120860(+) m6A CDS//exon       - chr11:64120901-64120902(+) m6A CDS//exon       - chr11:64120937-64120938(+) m6A CDS//exon       - chr11:64120953-64120954(+) m6A CDS//exon       24284625 chr11:64121188-64121189(+) m6A 5'UTR//CDS//exon       24284625 chr11:64121242-64121243(+) m6A CDS//exon       24284625 chr11:64121280-64121281(+) m6A CDS//exon       - chr11:64121495-64121496(+) m6A CDS//exon//intron       - chr11:64121638-64121639(+) m6A CDS//exon//intron       - chr11:64122724-64122725(+) m6A CDS//exon       24981863 chr11:64122750-64122751(+) m6A CDS//exon       24981863 chr11:64122803-64122804(+) m6A CDS//exon       24981863 chr11:64122879-64122880(+) m6A exon//intron       24284625//24981863 chr11:64122920-64122921(+) m6A exon//intron       24981863 chr11:64123032-64123033(+) m6A CDS//exon       - chr11:64123052-64123053(+) m6A CDS//exon       - chr11:64123063-64123064(+) m6A CDS//exon       - chr11:64123074-64123075(+) m6A CDS//exon       - chr11:64123081-64123082(+) m6A CDS//exon       - chr11:64123111-64123112(+) m6A exon//intron       - chr11:64123159-64123160(+) m6A exon//intron       - chr11:64124457-64124458(+) m6A exon//intron       - chr11:64124526-64124527(+) m6A CDS//exon       - chr11:64124576-64124577(+) m6A 3'UTR//CDS//exon       - chr11:64124659-64124660(+) m6A 3'UTR//CDS//exon       24284625 chr11:64124679-64124680(+) m6A 3'UTR//CDS//exon       24284625 chr11:64124754-64124755(+) m6A 3'UTR//CDS//exon       24284625//25456834 chr11:64124884-64124885(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr11:64124930-64124931(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr11:64124964-64124965(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr11:64124991-64124992(+) m6A 3'UTR//exon       24284625//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC88B	Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: CCDC88B

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg