Basic Information:

  VIRBase ID:  

VHID00132557

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          FAAP20:  NM_001282671     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	FAAP20
miRBase Accession/Entrez ID	MIMAT0014695	199990
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf86//FP7162

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAAP20	chr1:2119024(-) A-I      intronic chr1:2118811(-) A-I      intronic chr1:2120418(-) A-I      intronic chr1:2120280(-) A-I      intronic chr1:2118907(-) A-I      intronic chr1:2120263(-) A-I      intronic chr1:2120274(-) A-I      intronic chr1:2118791(-) A-I      intronic chr1:2118948(-) A-I      intronic chr1:2118796(-) A-I      intronic chr1:2118980(-) A-I      intronic chr1:2118962(-) A-I      intronic chr1:2118801(-) A-I      intronic chr1:2118809(-) A-I      intronic chr1:2120381(-) A-I      intronic chr1:2118937(-) A-I      intronic chr1:2118921(-) A-I      intronic chr1:2118936(-) A-I      intronic chr1:2118970(-) A-I      intronic chr1:2118820(-) A-I      intronic chr1:2118849(-) A-I      intronic chr1:2118855(-) A-I      intronic chr1:2118841(-) A-I      intronic chr1:2120382(-) A-I      intronic chr1:2132998(-) A-I      intronic chr1:2118754(-) A-I      intronic chr1:2118741(-) A-I      intronic chr1:2118946(-) A-I      intronic chr1:2118920(-) A-I      intronic chr1:2118961(-) A-I      intronic chr1:2120306(-) A-I      intronic chr1:2118882(-) A-I      intronic chr1:2119016(-) A-I      intronic chr1:2118842(-) A-I      intronic chr1:2123012(-) A-I      intronic chr1:2118816(-) A-I      intronic chr1:2118755(-) A-I      intronic chr1:2120442(-) A-I      intronic chr1:2118947(-) A-I      intronic chr1:2120251(-) A-I      intronic chr1:2124285(-) A-I      5'UTR chr1:2120255(-) A-I      intronic chr1:2120200(-) A-I      intronic chr1:2120036(-) A-I      intronic chr1:2118922(-) A-I      intronic chr1:2118840(-) A-I      intronic chr1:2118881(-) A-I      intronic chr1:2120296(-) A-I      intronic chr1:2118989(-) A-I      intronic chr1:2132995(-) A-I      intronic chr1:2118919(-) A-I      intronic chr1:2120188(-) A-I      intronic chr1:2133991(-) A-I      intronic chr1:2119015(-) A-I      intronic chr1:2119029(-) A-I      intronic chr1:2118892(-) A-I      intronic chr1:2120277(-) A-I      intronic chr1:2118872(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAAP20	chr1:2115929-2115930(-) m6A 3'UTR//exon       24981863//27773535 chr1:2116011-2116012(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr1:2116077-2116078(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr1:2116099-2116100(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr1:2116142-2116143(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr1:2116158-2116159(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:2116233-2116234(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:2116391-2116392(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:2116427-2116428(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:2116616-2116617(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr1:2116724-2116725(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2116818-2116819(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr1:2117464-2117465(-) m6A 3'UTR//intron       24284625 chr1:2118391-2118392(-) m6A 3'UTR//intron       24981863 chr1:2118428-2118429(-) m6A 3'UTR//intron       24981863 chr1:2118473-2118474(-) m6A 3'UTR//intron       24981863 chr1:2118487-2118488(-) m6A 3'UTR//intron       24981863//27371828 chr1:2121108-2121109(-) m6A 3'UTR//exon//intron       24284625//24981863//27773536 chr1:2121403-2121404(-) m6A exon//intron       - chr1:2121472-2121473(-) m6A exon//intron       - chr1:2121680-2121681(-) m6A exon//intron       27773536 chr1:2121853-2121854(-) m6A exon//intron       27773536 chr1:2121899-2121900(-) m6A exon//intron       27773536 chr1:2122084-2122085(-) m6A exon//intron       25456834//27371828//22575960//22608085 chr1:2122154-2122155(-) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr1:2122219-2122220(-) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr1:2122234-2122235(-) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr1:2122242-2122243(-) m6A exon//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr1:2122298-2122299(-) m6A exon//intron       24284625//25456834//24981863//27371828//22608085 chr1:2122335-2122336(-) m6A exon//intron       24284625//25456834//24981863//27371828//27773536//22608085 chr1:2122387-2122388(-) m6A exon//intron       24284625//25456834//27371828//27773536//22608085 chr1:2122508-2122509(-) m6A exon//intron       25456834//27773536//22608085 chr1:2122613-2122614(-) m6A exon//intron       27773536 chr1:2122621-2122622(-) m6A exon//intron       27773536 chr1:2122641-2122642(-) m6A exon//intron       27773536 chr1:2122695-2122696(-) m6A exon//intron       27773536 chr1:2122715-2122716(-) m6A exon//intron       27773536 chr1:2122978-2122979(-) m6A exon//intron       24209618 chr1:2123013-2123014(-) m6A exon//intron       24209618 chr1:2123314-2123315(-) m6A exon//intron       24284625 chr1:2123333-2123334(-) m6A exon//intron       22608085 chr1:2123385-2123386(-) m6A 3'UTR//exon//intron       22608085 chr1:2123409-2123410(-) m6A 3'UTR//exon//intron       22608085 chr1:2123536-2123537(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr1:2123548-2123549(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr1:2123597-2123598(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//22608085 chr1:2123614-2123615(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//22608085 chr1:2123650-2123651(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27371828//22608085 chr1:2123671-2123672(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123716-2123717(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123722-2123723(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123756-2123757(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123838-2123839(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085 chr1:2123883-2123884(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123905-2123906(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2123915-2123916(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2124065-2124066(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr1:2124079-2124080(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr1:2124405-2124406(-) m6A CDS//exon//intron       - chr1:2124454-2124455(-) m6A exon//intron       - chr1:2125269-2125270(-) m6A CDS//exon       24284625//27371828//27773536 chr1:2125285-2125286(-) m6A CDS//exon       24284625//27371828//27773536 chr1:2125297-2125298(-) m6A CDS//exon       24284625//27371828//27773536 chr1:2125304-2125305(-) m6A CDS//exon       24284625//27371828//27773536 chr1:2125439-2125440(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr1:2129449-2129450(-) m6A exon       24209618//24981863 chr1:2129458-2129459(-) m6A exon       24981863 chr1:2143512-2143513(-) m6A intron       24981863 chr1:2143540-2143541(-) m6A intron       24981863 chr1:2143563-2143564(-) m6A intron       24981863 chr1:2143698-2143699(-) m6A exon//intron       25456834//24981863 chr1:2143751-2143752(-) m6A exon//intron       25456834//24981863 chr1:2143785-2143786(-) m6A exon//intron       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAAP20	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: FAAP20

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg