Basic Information:

  VIRBase ID:  

VHID00132351

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          ANKLE1:  NM_001278443     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	ANKLE1
miRBase Accession/Entrez ID	MIMAT0014695	126549
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ANKRD41//LEM3//LEMD6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ANKLE1	chr19:17394340(+) A-I      NonSyn:His->Arg chr19:17395925(+) A-I      intronic chr19:17395569(+) A-I      intronic chr19:17395624(+) A-I      intronic chr19:17395595(+) A-I      intronic chr19:17395575(+) A-I      intronic chr19:17395574(+) A-I      intronic chr19:17396014(+) A-I      intronic chr19:17395961(+) A-I      intronic chr19:17395733(+) A-I      intronic chr19:17395883(+) A-I      intronic chr19:17397033(+) A-I      intronic chr19:17395634(+) A-I      intronic chr19:17395892(+) A-I      intronic chr19:17395989(+) A-I      intronic chr19:17395759(+) A-I      intronic chr19:17395681(+) A-I      intronic chr19:17395904(+) A-I      intronic chr19:17398132(+) A-I      3'UTR chr19:17395760(+) A-I      intronic chr19:17398160(+) A-I      3'UTR chr19:17396935(+) A-I      intronic chr19:17395246(+) A-I      intronic chr19:17395559(+) A-I      intronic chr19:17395678(+) A-I      intronic chr19:17395335(+) A-I      intronic chr19:17397085(+) A-I      intronic chr19:17395210(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ANKLE1	chr19:17395286(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ANKLE1	chr19:17393677-17393678(+) m6A 3'UTR//CDS//exon       - chr19:17393691-17393692(+) m6A 3'UTR//CDS//exon       - chr19:17393710-17393711(+) m6A 3'UTR//CDS//exon       - chr19:17393753-17393754(+) m6A 3'UTR//CDS//exon       - chr19:17393759-17393760(+) m6A 3'UTR//CDS//exon       - chr19:17393765-17393766(+) m6A 3'UTR//CDS//exon       - chr19:17393783-17393784(+) m6A 3'UTR//CDS//exon       - chr19:17394049-17394050(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394069-17394070(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394114-17394115(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394139-17394140(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394167-17394168(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394174-17394175(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394267-17394268(+) m6A 3'UTR//CDS//exon       25456834 chr19:17394279-17394280(+) m6A 3'UTR//CDS//exon       25456834 chr19:17394322-17394323(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394382-17394383(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394468-17394469(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394497-17394498(+) m6A 3'UTR//CDS//exon       25456834//24981863 chr19:17394545-17394546(+) m6A 3'UTR//CDS//exon       25456834 chr19:17394616-17394617(+) m6A 3'UTR//CDS//exon       25456834 chr19:17394679-17394680(+) m6A 3'UTR//CDS//exon       - chr19:17397561-17397562(+) m6A 3'UTR//exon       25456834//24981863 chr19:17397625-17397626(+) m6A 3'UTR//exon       25456834//24981863 chr19:17397654-17397655(+) m6A 3'UTR//exon       25456834 chr19:17397685-17397686(+) m6A 3'UTR       25456834 chr19:17397733-17397734(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ANKLE1	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: ANKLE1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg