Basic Information:

  VIRBase ID:  

VHID00132081

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          FAM120B:  NM_001286379     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	FAM120B
miRBase Accession/Entrez ID	MIMAT0014695	84498
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CCPG//dJ894D12.1//KIAA1838//PGCC1//SAN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM120B	chr6:170692615(+) A-I      intronic chr6:170700477(+) A-I      intronic chr6:170700611(+) A-I      intronic chr6:170700472(+) A-I      intronic chr6:170692607(+) A-I      intronic chr6:170692619(+) A-I      intronic chr6:170692630(+) A-I      intronic chr6:170668452(+) A-I      intronic chr6:170691293(+) A-I      intronic chr6:170668766(+) A-I      intronic chr6:170668645(+) A-I      intronic chr6:170668318(+) A-I      intronic chr6:170668282(+) A-I      intronic chr6:170668225(+) A-I      intronic chr6:170641610(+) A-I      intronic chr6:170701351(+) A-I      intronic chr6:170654424(+) A-I      intronic chr6:170642736(+) A-I      intronic chr6:170641621(+) A-I      intronic chr6:170642661(+) A-I      intronic chr6:170641627(+) A-I      intronic chr6:170700575(+) A-I      intronic chr6:170641624(+) A-I      intronic chr6:170700525(+) A-I      intronic chr6:170628591(+) A-I      intronic chr6:170628596(+) A-I      intronic chr6:170628597(+) A-I      intronic chr6:170628627(+) A-I      intronic chr6:170701370(+) A-I      intronic chr6:170701400(+) A-I      intronic chr6:170700502(+) A-I      intronic chr6:170701376(+) A-I      intronic chr6:170701425(+) A-I      intronic chr6:170642715(+) A-I      intronic chr6:170668346(+) A-I      intronic chr6:170700629(+) A-I      intronic chr6:170701435(+) A-I      intronic chr6:170668633(+) A-I      intronic chr6:170668643(+) A-I      intronic chr6:170668251(+) A-I      intronic chr6:170641635(+) A-I      intronic chr6:170700573(+) A-I      intronic chr6:170671079(+) A-I      intronic chr6:170700578(+) A-I      intronic chr6:170700634(+) A-I      intronic chr6:170700626(+) A-I      intronic chr6:170668217(+) A-I      intronic chr6:170668560(+) A-I      intronic chr6:170668360(+) A-I      intronic chr6:170700464(+) A-I      intronic chr6:170701462(+) A-I      intronic chr6:170668361(+) A-I      intronic chr6:170668762(+) A-I      intronic chr6:170701461(+) A-I      intronic chr6:170668567(+) A-I      intronic chr6:170700461(+) A-I      intronic chr6:170702145(+) A-I      intronic chr6:170668370(+) A-I      intronic chr6:170673097(+) A-I      intronic chr6:170668736(+) A-I      intronic chr6:170668559(+) A-I      intronic chr6:170630676(+) A-I      intronic chr6:170700463(+) A-I      intronic chr6:170700529(+) A-I      intronic chr6:170668621(+) A-I      intronic chr6:170668433(+) A-I      intronic chr6:170700543(+) A-I      intronic chr6:170700512(+) A-I      intronic chr6:170668431(+) A-I      intronic chr6:170642657(+) A-I      intronic chr6:170642669(+) A-I      intronic chr6:170701479(+) A-I      intronic chr6:170700458(+) A-I      intronic chr6:170700503(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FAM120B	chr6:170626883(+) A-I exon CDS    15342557 chr6:170700162(+) A-I exon CDS    15342557 chr6:170700458(+) A-I intron -    15342557 chr6:170700461(+) A-I intron -    15342557 chr6:170700462(+) A-I intron -    15342557 chr6:170700463(+) A-I intron -    15342557 chr6:170700464(+) A-I intron -    15342557 chr6:170700502(+) A-I intron -    15342557 chr6:170700503(+) A-I intron -    15342557 chr6:170700512(+) A-I intron -    15342557 chr6:170700529(+) A-I intron -    15342557 chr6:170701396(+) A-I intron -    15342557   //15258596 chr6:170701413(+) A-I intron -    15342557   //15258596 chr6:170701435(+) A-I intron -    15342557   //15258596   //21960545 chr6:170668789(+) A-I intron -    22327324 chr6:170689738(+) A-I intron -    21960545 chr6:170692416(+) A-I intron -    21960545 chr6:170702145(+) A-I intron -    21960545 chr6:170636038(+) A-G intron -    22484847 chr6:170641635(+) A-G intron -    22484847 chr6:170642657(+) A-G intron -    22484847 chr6:170642669(+) A-G intron -    22484847 chr6:170642715(+) A-G intron -    22484847 chr6:170654434(+) A-G intron -    22484847 chr6:170663953(+) C-G intron -    22484847 chr6:170668217(+) A-G intron -    22484847 chr6:170668251(+) A-G intron -    22484847 chr6:170668342(+) A-G intron -    22484847 chr6:170668346(+) A-G intron -    22484847 chr6:170668360(+) A-G intron -    22484847 chr6:170668361(+) A-G intron -    22484847 chr6:170668555(+) A-G intron -    22484847 chr6:170668559(+) A-G intron -    22484847 chr6:170668560(+) A-G intron -    22484847 chr6:170668567(+) A-G intron -    22484847 chr6:170668621(+) A-G intron -    22484847 chr6:170668633(+) A-G intron -    22484847 chr6:170668643(+) A-G intron -    22484847 chr6:170668761(+) A-G intron -    22484847 chr6:170668762(+) A-G intron -    22484847 chr6:170668789(+) A-G intron -    22484847 chr6:170671043(+) G-A intron -    22484847 chr6:170671079(+) A-G intron -    22484847 chr6:170671878(+) T-C intron -    22484847 chr6:170700458(+) A-G intron -    22484847 chr6:170700461(+) A-G intron -    22484847 chr6:170700462(+) A-G intron -    22484847 chr6:170700464(+) A-G intron -    22484847 chr6:170700467(+) A-G intron -    22484847 chr6:170700502(+) A-G intron -    22484847 chr6:170700503(+) A-G intron -    22484847 chr6:170700538(+) A-G intron -    22484847 chr6:170700543(+) A-G intron -    22484847 chr6:170700544(+) A-G intron -    22484847 chr6:170701370(+) A-G intron -    22484847 chr6:170701396(+) A-G intron -    22484847 chr6:170701413(+) A-G intron -    22484847 chr6:170701435(+) A-G intron -    22484847 chr6:170701476(+) A-G intron -    22484847 chr6:170701479(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM120B	chr6:170599908-170599909(+) m6A 5'UTR       27371828 chr6:170626552-170626553(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr6:170626706-170626707(+) m6A CDS//intron       24284625//24209618//22608085 chr6:170626800-170626801(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr6:170626916-170626917(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr6:170626931-170626932(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085 chr6:170627013-170627014(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085 chr6:170627082-170627083(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085 chr6:170627244-170627245(+) m6A CDS//intron       24981863//22608085 chr6:170627283-170627284(+) m6A CDS//intron       24981863//22608085 chr6:170627350-170627351(+) m6A CDS//intron       24981863//22608085 chr6:170627355-170627356(+) m6A CDS//intron       24981863//22608085 chr6:170627401-170627402(+) m6A CDS//intron       24981863//22608085 chr6:170627428-170627429(+) m6A CDS//intron       24981863//22608085 chr6:170627451-170627452(+) m6A CDS//intron       24981863//22608085 chr6:170627694-170627695(+) m6A CDS//intron       24209618//22608085 chr6:170627701-170627702(+) m6A CDS//intron       24209618//22608085 chr6:170627766-170627767(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr6:170627773-170627774(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr6:170627802-170627803(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:170627809-170627810(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:170627845-170627846(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:170627942-170627943(+) m6A CDS//intron       24284625//22608085 chr6:170627992-170627993(+) m6A CDS//intron       24284625//24981863//22608085 chr6:170628036-170628037(+) m6A CDS//intron       24284625//24981863//22608085 chr6:170628123-170628124(+) m6A CDS//intron       24284625//24981863//22608085 chr6:170628136-170628137(+) m6A CDS//intron       24284625//24981863//22608085 chr6:170628144-170628145(+) m6A CDS//intron       24284625//24981863//22608085 chr6:170628195-170628196(+) m6A CDS//intron       24981863//22608085 chr6:170704641-170704642(+) m6A CDS       24209618 chr6:170704655-170704656(+) m6A CDS       24209618 chr6:170704662-170704663(+) m6A CDS       24209618 chr6:170714267-170714268(+) m6A 3'UTR       22608085 chr6:170714277-170714278(+) m6A 3'UTR       22608085 chr6:170714297-170714298(+) m6A 3'UTR       24981863//22608085 chr6:170714376-170714377(+) m6A 3'UTR       24981863//22608085 chr6:170714475-170714476(+) m6A 3'UTR       24981863//22608085 chr6:170714484-170714485(+) m6A 3'UTR       24981863//22608085 chr6:170714630-170714631(+) m6A 3'UTR       24981863 chr6:170714656-170714657(+) m6A 3'UTR       24981863 chr6:170715091-170715092(+) m6A 3'UTR       24981863 chr6:170715293-170715294(+) m6A 3'UTR       24209618//24981863 chr6:170715300-170715301(+) m6A 3'UTR       24209618//24981863 chr6:170715427-170715428(+) m6A 3'UTR       24209618 chr6:170715457-170715458(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM120B	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: FAM120B

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg