Basic Information:

  VIRBase ID:  

VHID00131974

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          NDEL1:  NM_001330129     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	NDEL1
miRBase Accession/Entrez ID	MIMAT0014695	81565
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EOPA//MITAP1//NDE1L1//NDE2//NUDEL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NDEL1	chr17:8376646(+) A-I      intronic chr17:8376598(+) A-I      intronic chr17:8374543(+) A-I      intronic chr17:8376654(+) A-I      intronic chr17:8372170(+) A-I      intronic chr17:8374594(+) A-I      intronic chr17:8372268(+) A-I      intronic chr17:8372242(+) A-I      intronic chr17:8372179(+) A-I      intronic chr17:8372172(+) A-I      intronic chr17:8341418(+) A-I      intronic chr17:8352370(+) A-I      intronic chr17:8345758(+) A-I      intronic chr17:8345752(+) A-I      intronic chr17:8341991(+) A-I      intronic chr17:8341986(+) A-I      intronic chr17:8341951(+) A-I      intronic chr17:8341946(+) A-I      intronic chr17:8341537(+) A-I      intronic chr17:8376657(+) A-I      intronic chr17:8376615(+) A-I      intronic chr17:8376605(+) A-I      intronic chr17:8376584(+) A-I      intronic chr17:8375941(+) A-I      intronic chr17:8375829(+) A-I      intronic chr17:8375778(+) A-I      intronic chr17:8375777(+) A-I      intronic chr17:8374608(+) A-I      intronic chr17:8374605(+) A-I      intronic chr17:8374598(+) A-I      intronic chr17:8341457(+) A-I      intronic chr17:8341527(+) A-I      intronic chr17:8372166(+) A-I      intronic chr17:8341466(+) A-I      intronic chr17:8376781(+) A-I      intronic chr17:8375931(+) A-I      intronic chr17:8375926(+) A-I      intronic chr17:8342401(+) A-I      intronic chr17:8343778(+) A-I      intronic chr17:8343673(+) A-I      intronic chr17:8375717(+) A-I      intronic chr17:8373288(+) A-I      intronic chr17:8372243(+) A-I      intronic chr17:8342425(+) A-I      intronic chr17:8372201(+) A-I      intronic chr17:8375886(+) A-I      intronic chr17:8343711(+) A-I      intronic chr17:8374569(+) A-I      intronic chr17:8343670(+) A-I      intronic chr17:8376579(+) A-I      intronic chr17:8342441(+) A-I      intronic chr17:8376688(+) A-I      intronic chr17:8343739(+) A-I      intronic chr17:8343689(+) A-I      intronic chr17:8343656(+) A-I      intronic chr17:8343657(+) A-I      intronic chr17:8343624(+) A-I      intronic chr17:8374549(+) A-I      intronic chr17:8375722(+) A-I      intronic chr17:8358912(+) A-I      intronic chr17:8341394(+) A-I      intronic chr17:8372112(+) A-I      intronic chr17:8375698(+) A-I      intronic chr17:8375782(+) A-I      intronic chr17:8343685(+) A-I      intronic chr17:8376634(+) A-I      intronic chr17:8373122(+) A-I      intronic chr17:8376714(+) A-I      intronic chr17:8375757(+) A-I      intronic chr17:8375775(+) A-I      intronic chr17:8376622(+) A-I      intronic chr17:8375863(+) A-I      intronic chr17:8376741(+) A-I      intronic chr17:8341995(+) A-I      intronic chr17:8374525(+) A-I      intronic chr17:8341416(+) A-I      intronic chr17:8376685(+) A-I      intronic chr17:8376644(+) A-I      intronic chr17:8375862(+) A-I      intronic chr17:8342386(+) A-I      intronic chr17:8358920(+) A-I      intronic chr17:8376569(+) A-I      intronic chr17:8341442(+) A-I      intronic chr17:8359002(+) A-I      intronic chr17:8376740(+) A-I      intronic chr17:8372211(+) A-I      intronic chr17:8375710(+) A-I      intronic chr17:8373840(+) A-I      intronic chr17:8373841(+) A-I      intronic chr17:8343693(+) A-I      intronic chr17:8376766(+) A-I      intronic chr17:8376630(+) A-I      intronic chr17:8358884(+) A-I      intronic chr17:8375812(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NDEL1	chr17:8341995(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NDEL1	chr17:8339191-8339192(+) m6A 5'UTR//exon//intron       24981863 chr17:8339339-8339340(+) m6A 5'UTR//exon//intron       24981863 chr17:8347634-8347635(+) m6A CDS//exon       27773535 chr17:8347651-8347652(+) m6A CDS//exon       27773535 chr17:8349118-8349119(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535 chr17:8349132-8349133(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535 chr17:8349154-8349155(+) m6A 3'UTR//CDS//exon//intron       24981863//27773535 chr17:8350140-8350141(+) m6A 3'UTR//CDS//exon//intron       24981863 chr17:8370389-8370390(+) m6A 3'UTR//exon//intron       24284625//24209618//22575960 chr17:8370510-8370511(+) m6A 3'UTR//CDS//exon//intron       24284625//24981863 chr17:8370705-8370706(+) m6A 3'UTR//exon//intron       24284625//24209618 chr17:8370871-8370872(+) m6A 3'UTR//exon//intron       24284625 chr17:8370919-8370920(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr17:8371032-8371033(+) m6A 3'UTR//exon//intron       24284625//24981863//22575960 chr17:8371193-8371194(+) m6A 3'UTR//exon//intron       24209618 chr17:8371198-8371199(+) m6A 3'UTR//exon//intron       24209618 chr17:8371455-8371456(+) m6A 3'UTR//exon//intron       27773536 chr17:8383841-8383842(+) m6A intron       25456834//27773536 chr17:8383936-8383937(+) m6A intron       24284625//25456834 chr17:8393584-8393585(+) m6A CDS       24284625//25456834//24981863 chr17:8393722-8393723(+) m6A CDS       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NDEL1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: NDEL1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg