Basic Information:

  VIRBase ID:  

VHID00131736

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          SLC17A9:  NM_022082     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	SLC17A9
miRBase Accession/Entrez ID	MIMAT0014695	63910
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf59//POROK8//VNUT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC17A9	chr20:61586848(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC17A9	chr20:61584057-61584058(+) m6A 5'UTR       25456834 chr20:61584078-61584079(+) m6A 5'UTR//exon       25456834 chr20:61584090-61584091(+) m6A 5'UTR//exon       25456834 chr20:61584143-61584144(+) m6A 5'UTR//exon       25456834 chr20:61584213-61584214(+) m6A 5'UTR//CDS//exon       25456834 chr20:61584225-61584226(+) m6A 5'UTR//CDS//exon       25456834 chr20:61595128-61595129(+) m6A exon//intron       - chr20:61595146-61595147(+) m6A exon//intron       - chr20:61595189-61595190(+) m6A exon//intron       - chr20:61598621-61598622(+) m6A exon//intron       - chr20:61598726-61598727(+) m6A CDS//exon       25456834 chr20:61598741-61598742(+) m6A CDS//exon       25456834 chr20:61598806-61598807(+) m6A CDS//exon       25456834//24981863//27773535 chr20:61598823-61598824(+) m6A CDS//exon       25456834//24981863//27773535 chr20:61598844-61598845(+) m6A CDS//exon       25456834//24981863//27773535 chr20:61598878-61598879(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598901-61598902(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598910-61598911(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598924-61598925(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598944-61598945(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598962-61598963(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61598968-61598969(+) m6A 3'UTR//exon       25456834//24981863//27773535 chr20:61599043-61599044(+) m6A 3'UTR//exon       25456834 chr20:61599201-61599202(+) m6A 3'UTR//exon       - chr20:61599513-61599514(+) m6A 3'UTR//exon       - chr20:61599547-61599548(+) m6A 3'UTR//exon       - chr20:61599566-61599567(+) m6A 3'UTR//exon       - chr20:61599682-61599683(+) m6A 3'UTR//exon       - chr20:61599768-61599769(+) m6A 3'UTR//exon       27773535 chr20:61599776-61599777(+) m6A 3'UTR//exon       27773535 chr20:61599881-61599882(+) m6A 3'UTR//exon       27773535 chr20:61599934-61599935(+) m6A 3'UTR//exon       27773535 chr20:61599989-61599990(+) m6A 3'UTR       - chr20:61600002-61600003(+) m6A 3'UTR       - chr20:61600075-61600076(+) m6A 3'UTR       - chr20:61600396-61600397(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC17A9	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: SLC17A9

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg