Basic Information:

  VIRBase ID:  

VHID00129871

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H17:  MIMAT0014695          ITGA3:  NM_002204     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H17	ITGA3
miRBase Accession/Entrez ID	MIMAT0014695	3675
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD49C//FRP-2//GAP-B3//GAPB3//ILNEB//MSK18//VCA-2//VL3A//VLA3a

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ITGA3	chr17:48144084(+) A-I      intronic chr17:48144147(+) A-I      intronic chr17:48159456(+) A-I      intronic chr17:48160937(+) A-I      intronic chr17:48143186(+) A-I      intronic chr17:48161420(+) A-I      intronic chr17:48161436(+) A-I      intronic chr17:48161437(+) A-I      intronic chr17:48161447(+) A-I      intronic chr17:48145928(+) A-I      intronic chr17:48145965(+) A-I      intronic chr17:48162872(+) A-I      intronic chr17:48163942(+) A-I      intronic chr17:48146810(+) A-I      intronic chr17:48146835(+) A-I      intronic chr17:48146844(+) A-I      intronic chr17:48146865(+) A-I      intronic chr17:48146868(+) A-I      intronic chr17:48146883(+) A-I      intronic chr17:48146903(+) A-I      intronic chr17:48146907(+) A-I      intronic chr17:48159454(+) A-I      intronic chr17:48159684(+) A-I      intronic chr17:48160931(+) A-I      intronic chr17:48161421(+) A-I      intronic chr17:48159914(+) A-I      intronic chr17:48159928(+) A-I      intronic chr17:48162878(+) A-I      intronic chr17:48162901(+) A-I      intronic chr17:48162921(+) A-I      intronic chr17:48163906(+) A-I      intronic chr17:48163924(+) A-I      intronic chr17:48163931(+) A-I      intronic chr17:48162827(+) A-I      intronic chr17:48163933(+) A-I      intronic chr17:48163949(+) A-I      intronic chr17:48164327(+) A-I      intronic chr17:48164328(+) A-I      intronic chr17:48162851(+) A-I      intronic chr17:48159959(+) A-I      intronic chr17:48160888(+) A-I      intronic chr17:48143220(+) A-I      intronic chr17:48144073(+) A-I      intronic chr17:48160928(+) A-I      intronic chr17:48143197(+) A-I      intronic chr17:48143195(+) A-I      intronic chr17:48143200(+) A-I      intronic chr17:48143303(+) A-I      intronic chr17:48143318(+) A-I      intronic chr17:48143346(+) A-I      intronic chr17:48143913(+) A-I      intronic chr17:48144060(+) A-I      intronic chr17:48161445(+) A-I      intronic chr17:48147890(+) A-I      intronic chr17:48161446(+) A-I      intronic chr17:48161448(+) A-I      intronic chr17:48161452(+) A-I      intronic chr17:48162050(+) A-I      intronic chr17:48162400(+) A-I      intronic chr17:48162828(+) A-I      intronic chr17:48144089(+) A-I      intronic chr17:48144109(+) A-I      intronic chr17:48162842(+) A-I      intronic chr17:48162843(+) A-I      intronic chr17:48162853(+) A-I      intronic chr17:48162875(+) A-I      intronic chr17:48162876(+) A-I      intronic chr17:48163798(+) A-I      intronic chr17:48163824(+) A-I      intronic chr17:48163959(+) A-I      intronic chr17:48163962(+) A-I      intronic chr17:48164296(+) A-I      intronic chr17:48164305(+) A-I      intronic chr17:48164373(+) A-I      intronic chr17:48159803(+) A-I      intronic chr17:48163877(+) A-I      intronic chr17:48147736(+) A-I      intronic chr17:48147738(+) A-I      intronic chr17:48147845(+) A-I      intronic chr17:48147916(+) A-I      intronic chr17:48147960(+) A-I      intronic chr17:48147965(+) A-I      intronic chr17:48147967(+) A-I      intronic chr17:48159481(+) A-I      intronic chr17:48159486(+) A-I      intronic chr17:48159582(+) A-I      intronic chr17:48159682(+) A-I      intronic chr17:48159740(+) A-I      intronic chr17:48159802(+) A-I      intronic chr17:48159885(+) A-I      intronic chr17:48160841(+) A-I      intronic chr17:48160862(+) A-I      intronic chr17:48160900(+) A-I      intronic chr17:48161339(+) A-I      intronic chr17:48161354(+) A-I      intronic chr17:48161412(+) A-I      intronic chr17:48161438(+) A-I      intronic chr17:48161439(+) A-I      intronic chr17:48161440(+) A-I      intronic chr17:48161442(+) A-I      intronic chr17:48162401(+) A-I      intronic chr17:48146049(+) A-I      intronic chr17:48143309(+) A-I      intronic chr17:48159478(+) A-I      intronic chr17:48160826(+) A-I      intronic chr17:48162877(+) A-I      intronic chr17:48160967(+) A-I      intronic chr17:48162055(+) A-I      intronic chr17:48159451(+) A-I      intronic chr17:48162123(+) A-I      intronic chr17:48159859(+) A-I      intronic chr17:48162907(+) A-I      intronic chr17:48159923(+) A-I      intronic chr17:48159938(+) A-I      intronic chr17:48162908(+) A-I      intronic chr17:48144080(+) A-I      intronic chr17:48159856(+) A-I      intronic chr17:48162870(+) A-I      intronic chr17:48162774(+) A-I      intronic chr17:48160833(+) A-I      intronic chr17:48160961(+) A-I      intronic chr17:48164322(+) A-I      intronic chr17:48146774(+) A-I      intronic chr17:48163820(+) A-I      intronic chr17:48161345(+) A-I      intronic chr17:48162322(+) A-I      intronic chr17:48146040(+) A-I      intronic chr17:48162881(+) A-I      intronic chr17:48163013(+) A-I      intronic chr17:48159394(+) A-I      intronic chr17:48159672(+) A-I      intronic chr17:48161008(+) A-I      intronic chr17:48143493(+) A-I      intronic chr17:48159956(+) A-I      intronic chr17:48159911(+) A-I      intronic chr17:48162029(+) A-I      intronic chr17:48162418(+) A-I      intronic chr17:48162419(+) A-I      intronic chr17:48162934(+) A-I      intronic chr17:48143593(+) A-I      intronic chr17:48159850(+) A-I      intronic chr17:48159464(+) A-I      intronic chr17:48161367(+) A-I      intronic chr17:48159898(+) A-I      intronic chr17:48162445(+) A-I      intronic chr17:48162181(+) A-I      intronic chr17:48143472(+) A-I      intronic chr17:48147006(+) A-I      intronic chr17:48161323(+) A-I      intronic chr17:48143462(+) A-I      intronic chr17:48162154(+) A-I      intronic chr17:48161483(+) A-I      intronic chr17:48143219(+) A-I      intronic chr17:48161346(+) A-I      intronic chr17:48159402(+) A-I      intronic chr17:48162459(+) A-I      intronic chr17:48143709(+) A-I      intronic chr17:48160938(+) A-I      intronic chr17:48159821(+) A-I      intronic chr17:48160854(+) A-I      intronic chr17:48162391(+) A-I      intronic chr17:48147018(+) A-I      intronic chr17:48146146(+) A-I      intronic chr17:48162455(+) A-I      intronic chr17:48159668(+) A-I      intronic chr17:48162446(+) A-I      intronic chr17:48143212(+) A-I      intronic chr17:48159452(+) A-I      intronic chr17:48160901(+) A-I      intronic chr17:48159455(+) A-I      intronic chr17:48162472(+) A-I      intronic chr17:48159570(+) A-I      intronic chr17:48160858(+) A-I      intronic chr17:48159422(+) A-I      intronic chr17:48159723(+) A-I      intronic chr17:48161478(+) A-I      intronic chr17:48160832(+) A-I      intronic chr17:48162869(+) A-I      intronic chr17:48159748(+) A-I      intronic chr17:48147017(+) A-I      intronic chr17:48146435(+) A-I      intronic chr17:48163079(+) A-I      intronic chr17:48163630(+) A-I      intronic chr17:48143960(+) A-I      intronic chr17:48162185(+) A-I      intronic chr17:48144054(+) A-I      intronic chr17:48159601(+) A-I      intronic chr17:48147748(+) A-I      intronic chr17:48161504(+) A-I      intronic chr17:48163072(+) A-I      intronic chr17:48161491(+) A-I      intronic chr17:48159469(+) A-I      intronic chr17:48143492(+) A-I      intronic chr17:48136489(+) A-I      intronic chr17:48150992(+) A-I      intronic chr17:48160089(+) A-I      intronic chr17:48164269(+) A-I      intronic chr17:48143578(+) A-I      intronic chr17:48143992(+) A-I      intronic chr17:48161013(+) A-I      intronic chr17:48160990(+) A-I      intronic chr17:48163047(+) A-I      intronic chr17:48160941(+) A-I      intronic chr17:48159815(+) A-I      intronic chr17:48160994(+) A-I      intronic chr17:48143748(+) A-I      intronic chr17:48143944(+) A-I      intronic chr17:48159491(+) A-I      intronic chr17:48147931(+) A-I      intronic chr17:48162930(+) A-I      intronic chr17:48161451(+) A-I      intronic chr17:48161427(+) A-I      intronic chr17:48159866(+) A-I      intronic chr17:48163058(+) A-I      intronic chr17:48159910(+) A-I      intronic chr17:48163077(+) A-I      intronic chr17:48161477(+) A-I      intronic chr17:48159728(+) A-I      intronic chr17:48143632(+) A-I      intronic chr17:48161507(+) A-I      intronic chr17:48162026(+) A-I      intronic chr17:48160607(+) A-I      intronic chr17:48161359(+) A-I      intronic chr17:48159669(+) A-I      intronic chr17:48161422(+) A-I      intronic chr17:48159950(+) A-I      intronic chr17:48145999(+) A-I      intronic chr17:48162035(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ITGA3	chr17:48159728(+) A-I intron -    15258596 chr17:48159748(+) A-I intron -    15258596 chr17:48160089(+) A-I intron -    15342557 chr17:48160607(+) A-I intron -    15342557 chr17:48160833(+) A-I intron -    15342557   //15258596 chr17:48160967(+) A-I intron -    15342557   //15258596 chr17:48160990(+) A-I intron -    15342557   //15258596 chr17:48160994(+) A-I intron -    15342557   //15258596 chr17:48143462(+) A-I intron -    21960545 chr17:48143492(+) A-I intron -    21960545 chr17:48143493(+) A-I intron -    21960545 chr17:48143632(+) A-I intron -    21960545 chr17:48146049(+) A-I intron -    21960545 chr17:48147748(+) A-I intron -    21960545 chr17:48150992(+) A-I intron -    21960545 chr17:48159452(+) A-I intron -    21960545 chr17:48159455(+) A-I intron -    21960545 chr17:48159464(+) A-I intron -    21960545 chr17:48159859(+) A-I intron -    21960545 chr17:48160854(+) A-I intron -    21960545 chr17:48160941(+) A-I intron -    21960545 chr17:48162055(+) A-I intron -    21960545 chr17:48162472(+) A-I intron -    21960545 chr17:48143992(+) A-G intron -    22484847 chr17:48160833(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ITGA3	chr17:48133531-48133532(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//27773536//22575960 chr17:48133600-48133601(+) m6A 5'UTR//exon//intron       24209618//25456834//24981863//26404942//27773536//22575960 chr17:48133642-48133643(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr17:48133666-48133667(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr17:48133736-48133737(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//22575960 chr17:48133782-48133783(+) m6A 5'UTR//exon//intron       24209618//25456834//22575960 chr17:48145519-48145520(+) m6A CDS//exon//intron       26404942//22575960 chr17:48145539-48145540(+) m6A CDS//exon//intron       26404942//22575960 chr17:48145573-48145574(+) m6A CDS//exon//intron       26404942//22575960 chr17:48145627-48145628(+) m6A CDS//exon//intron       22575960 chr17:48148716-48148717(+) m6A 3'UTR//CDS//exon//intron       26404942 chr17:48153706-48153707(+) m6A 3'UTR//CDS//exon       22575960 chr17:48153732-48153733(+) m6A 3'UTR//CDS//exon       22575960 chr17:48153828-48153829(+) m6A 3'UTR//CDS//exon       22575960 chr17:48156221-48156222(+) m6A CDS//exon       - chr17:48156248-48156249(+) m6A CDS//exon       - chr17:48165117-48165118(+) m6A CDS//exon//intron       24284625 chr17:48165672-48165673(+) m6A CDS//exon//intron       24284625//24981863 chr17:48166491-48166492(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//22575960 chr17:48166608-48166609(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942//22575960 chr17:48166615-48166616(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//26404942 chr17:48166823-48166824(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//26404942//22575960 chr17:48166888-48166889(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr17:48166952-48166953(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr17:48167073-48167074(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167182-48167183(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167197-48167198(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167213-48167214(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167226-48167227(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167281-48167282(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167286-48167287(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167312-48167313(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167318-48167319(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167389-48167390(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167400-48167401(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167481-48167482(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167491-48167492(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:48167557-48167558(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960 chr17:48167697-48167698(+) m6A 3'UTR//exon       24284625 chr17:48167828-48167829(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ITGA3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H17
Interactor2: ITGA3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg