Basic Information:

  VIRBase ID:  

VHID00128813

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          PIGW:  NM_001346755     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	PIGW
miRBase Accession/Entrez ID	MIMAT0014694	284098
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Gwt1//HPMRS5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PIGW	chr17:34891606(+) A-I      intronic chr17:34894622(+) A-I      3'UTR chr17:34894775(+) A-I      3'UTR chr17:34891605(+) A-I      intronic chr17:34894878(+) A-I      3'UTR chr17:34894866(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PIGW	chr17:34890990-34890991(+) m6A 5'UTR//intron       24209618//25456834//24981863//27371828 chr17:34891087-34891088(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr17:34891219-34891220(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:34891246-34891247(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr17:34891408-34891409(+) m6A 5'UTR//intron       24284625//24209618//22608085 chr17:34892998-34892999(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:34893112-34893113(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:34893253-34893254(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:34893267-34893268(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:34893302-34893303(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr17:34893392-34893393(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:34893424-34893425(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:34893439-34893440(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr17:34893551-34893552(+) m6A CDS       24284625//24209618//24981863//22608085 chr17:34893630-34893631(+) m6A CDS       24209618//24981863//22608085 chr17:34893659-34893660(+) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PIGW	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: PIGW

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg