Detail Information

Basic Information:


  VIRBase ID:  

VHID00128170

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:           RINL:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H16 RINL
miRBase
Accession/Entrez ID		 MIMAT0014694 126432
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RINL
chr19:39359081(-) A-I      3'UTR
chr19:39358792(-) A-I      3'UTR
chr19:39358743(-) A-I      3'UTR
chr19:39358751(-) A-I      3'UTR
chr19:39358759(-) A-I      3'UTR
chr19:39358789(-) A-I      3'UTR
chr19:39358761(-) A-I      3'UTR
chr19:39366205(-) A-I      intronic
chr19:39365061(-) A-I      intronic
chr19:39364262(-) A-I      intronic
chr19:39364201(-) A-I      intronic
chr19:39364234(-) A-I      intronic
chr19:39366235(-) A-I      intronic
chr19:39365530(-) A-I      intronic
chr19:39365549(-) A-I      intronic
chr19:39366113(-) A-I      intronic
chr19:39362958(-) A-I      intronic
chr19:39365583(-) A-I      intronic
chr19:39362960(-) A-I      intronic
chr19:39362977(-) A-I      intronic
chr19:39362982(-) A-I      intronic
chr19:39362991(-) A-I      intronic
chr19:39365693(-) A-I      intronic
chr19:39365692(-) A-I      intronic
chr19:39358659(-) A-I      3'UTR
chr19:39358765(-) A-I      3'UTR
chr19:39358778(-) A-I      3'UTR
chr19:39358817(-) A-I      3'UTR
chr19:39358702(-) A-I      3'UTR
chr19:39358849(-) A-I      3'UTR
chr19:39358835(-) A-I      3'UTR
chr19:39358827(-) A-I      3'UTR
chr19:39359107(-) A-I      3'UTR
chr19:39359708(-) A-I      3'UTR
chr19:39359657(-) A-I      3'UTR
chr19:39363280(-) A-I      intronic
chr19:39365972(-) A-I      intronic
chr19:39365937(-) A-I      intronic
chr19:39366828(-) A-I      intronic
chr19:39364251(-) A-I      intronic
chr19:39365133(-) A-I      intronic
chr19:39362963(-) A-I      intronic
chr19:39364269(-) A-I      intronic
chr19:39363349(-) A-I      intronic
chr19:39364342(-) A-I      intronic
chr19:39364330(-) A-I      intronic
chr19:39363655(-) A-I      intronic
chr19:39365189(-) A-I      intronic
chr19:39365145(-) A-I      intronic
chr19:39363656(-) A-I      intronic
chr19:39362875(-) A-I      intronic
chr19:39366123(-) A-I      intronic
chr19:39362881(-) A-I      intronic
chr19:39364304(-) A-I      intronic
chr19:39362896(-) A-I      intronic
chr19:39359620(-) A-I      3'UTR
chr19:39365918(-) A-I      intronic
chr19:39359100(-) A-I      3'UTR
chr19:39359028(-) A-I      3'UTR
chr19:39359062(-) A-I      3'UTR
chr19:39359691(-) A-I      3'UTR
chr19:39365923(-) A-I      intronic
chr19:39366815(-) A-I      intronic
chr19:39359713(-) A-I      3'UTR
chr19:39359106(-) A-I      3'UTR
chr19:39366153(-) A-I      intronic
chr19:39359125(-) A-I      3'UTR
chr19:39359668(-) A-I      3'UTR
chr19:39363615(-) A-I      intronic
chr19:39359056(-) A-I      3'UTR
chr19:39364430(-) A-I      intronic
chr19:39358836(-) A-I      3'UTR
chr19:39364294(-) A-I      intronic
chr19:39363625(-) A-I      intronic
chr19:39359070(-) A-I      3'UTR
chr19:39359229(-) A-I      3'UTR
chr19:39366193(-) A-I      intronic
chr19:39366838(-) A-I      intronic
chr19:39359152(-) A-I      3'UTR
chr19:39363002(-) A-I      intronic
chr19:39358703(-) A-I      3'UTR
chr19:39359166(-) A-I      3'UTR
chr19:39359016(-) A-I      3'UTR
chr19:39359055(-) A-I      3'UTR
chr19:39359157(-) A-I      3'UTR
chr19:39359105(-) A-I      3'UTR
chr19:39358866(-) A-I      3'UTR
chr19:39358724(-) A-I      3'UTR
chr19:39359558(-) A-I      3'UTR
chr19:39359068(-) A-I      3'UTR
chr19:39358857(-) A-I      3'UTR
chr19:39365077(-) A-I      intronic
chr19:39364339(-) A-I      intronic
chr19:39359191(-) A-I      3'UTR
chr19:39359119(-) A-I      3'UTR
chr19:39358822(-) A-I      3'UTR
chr19:39365018(-) A-I      intronic
chr19:39363699(-) A-I      intronic
chr19:39363004(-) A-I      intronic
chr19:39358804(-) A-I      3'UTR
chr19:39363639(-) A-I      intronic
chr19:39358852(-) A-I      3'UTR
chr19:39365159(-) A-I      intronic
chr19:39359150(-) A-I      3'UTR
chr19:39359021(-) A-I      3'UTR
chr19:39359165(-) A-I      3'UTR
chr19:39358779(-) A-I      3'UTR
chr19:39363057(-) A-I      intronic
chr19:39359139(-) A-I      3'UTR
chr19:39359707(-) A-I      3'UTR
chr19:39365963(-) A-I      intronic
chr19:39359190(-) A-I      3'UTR
chr19:39359601(-) A-I      3'UTR
chr19:39359051(-) A-I      3'UTR
chr19:39359714(-) A-I      3'UTR
chr19:39365635(-) A-I      intronic
chr19:39359205(-) A-I      3'UTR
chr19:39364204(-) A-I      intronic
chr19:39364341(-) A-I      intronic
chr19:39359029(-) A-I      3'UTR
chr19:39364258(-) A-I      intronic
chr19:39365558(-) A-I      intronic
chr19:39363039(-) A-I      intronic
chr19:39365924(-) A-I      intronic
chr19:39364948(-) A-I      intronic
chr19:39363043(-) A-I      intronic
chr19:39363350(-) A-I      intronic
chr19:39363693(-) A-I      intronic
chr19:39363626(-) A-I      intronic
chr19:39365093(-) A-I      intronic
chr19:39364359(-) A-I      intronic
chr19:39363258(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RINL
chr19:39358724(-) A-I exon 3'UTR    22327324
chr19:39358725(-) A-I exon 3'UTR    22327324
chr19:39358857(-) A-I exon 3'UTR    22327324
chr19:39358866(-) A-I exon 3'UTR    22327324
chr19:39359028(-) A-I exon 3'UTR    22327324
chr19:39359051(-) A-I exon 3'UTR    21960545   //22327324
chr19:39359055(-) A-I exon 3'UTR    21960545   //22327324
chr19:39359070(-) A-I exon 3'UTR    22327324
chr19:39359100(-) A-I exon 3'UTR    22327324
chr19:39359152(-) A-I exon 3'UTR    22327324
chr19:39359162(-) A-I exon 3'UTR    21960545   //22327324
chr19:39359229(-) A-I exon 3'UTR    22327324
chr19:39359707(-) A-I exon 3'UTR    21960545   //22327324
chr19:39359713(-) A-I exon 3'UTR    22327324
chr19:39362875(-) A-I intron -    22327324
chr19:39358724(-) A-G exon 3'UTR    21725310   //22484847
chr19:39359055(-) A-G exon 3'UTR    21725310   //22484847
chr19:39359229(-) A-G exon 3'UTR    21725310   //22484847
chr19:39359707(-) A-G exon 3'UTR    21725310   //22484847
chr19:39358715(-) A-G exon 3'UTR    22484847
chr19:39358725(-) A-G exon 3'UTR    22484847
chr19:39358779(-) A-G exon 3'UTR    22484847
chr19:39358803(-) A-G exon 3'UTR    22484847
chr19:39358804(-) A-G exon 3'UTR    22484847
chr19:39358822(-) A-G exon 3'UTR    22484847
chr19:39358836(-) A-G exon 3'UTR    22484847
chr19:39358852(-) A-G exon 3'UTR    22484847
chr19:39358857(-) A-G exon 3'UTR    22484847
chr19:39358858(-) A-G exon 3'UTR    22484847
chr19:39358866(-) A-G exon 3'UTR    22484847
chr19:39359028(-) A-G exon 3'UTR    22484847
chr19:39359029(-) A-G exon 3'UTR    22484847
chr19:39359051(-) A-G exon 3'UTR    22484847
chr19:39359052(-) A-G exon 3'UTR    22484847
chr19:39359056(-) A-G exon 3'UTR    22484847
chr19:39359062(-) A-G exon 3'UTR    22484847
chr19:39359069(-) A-G exon 3'UTR    22484847
chr19:39359070(-) A-G exon 3'UTR    22484847
chr19:39359100(-) A-G exon 3'UTR    22484847
chr19:39359105(-) A-G exon 3'UTR    22484847
chr19:39359106(-) A-G exon 3'UTR    22484847
chr19:39359150(-) A-G exon 3'UTR    22484847
chr19:39359152(-) A-G exon 3'UTR    22484847
chr19:39359162(-) A-G exon 3'UTR    22484847
chr19:39359190(-) A-G exon 3'UTR    22484847
chr19:39359205(-) A-G exon 3'UTR    22484847
chr19:39359211(-) A-G exon 3'UTR    22484847
chr19:39359606(-) C-A exon 3'UTR    22484847
chr19:39359668(-) A-G exon 3'UTR    22484847
chr19:39359691(-) A-G exon 3'UTR    22484847
chr19:39359697(-) A-G exon 3'UTR    22484847
chr19:39359713(-) A-G exon 3'UTR    22484847
chr19:39362875(-) A-G intron -    22484847
chr19:39362881(-) A-G intron -    22484847
chr19:39363535(-) T-A intron -    22484847
chr19:39363632(-) A-G intron -    22484847
chr19:39363639(-) A-G intron -    22484847
chr19:39364251(-) A-G intron -    22484847
chr19:39364258(-) A-G intron -    22484847
chr19:39364269(-) A-G intron -    22484847
chr19:39364274(-) A-G intron -    22484847
chr19:39364344(-) A-G intron -    22484847
chr19:39364430(-) A-G intron -    22484847
chr19:39365127(-) A-G intron -    22484847
chr19:39365133(-) A-G intron -    22484847
chr19:39365145(-) A-G intron -    22484847
chr19:39366838(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RINL
chr19:39358576-39358577(-) m6A 3'UTR       27773535
chr19:39358612-39358613(-) m6A 3'UTR       27773535
chr19:39359757-39359758(-) m6A 3'UTR//CDS//exon       24981863//28052920
chr19:39359769-39359770(-) m6A CDS//exon       24981863//28052920
chr19:39359846-39359847(-) m6A CDS//intron       -
chr19:39359987-39359988(-) m6A CDS//exon       -
chr19:39360274-39360275(-) m6A 5'UTR//CDS//exon       27371828
chr19:39360283-39360284(-) m6A 5'UTR//CDS//exon       27371828
chr19:39360300-39360301(-) m6A 5'UTR//CDS//exon       27371828
chr19:39360365-39360366(-) m6A exon//intron       27371828
chr19:39360587-39360588(-) m6A CDS//exon       -
chr19:39360736-39360737(-) m6A CDS//exon       27371828
chr19:39360783-39360784(-) m6A CDS//exon       27371828
chr19:39360837-39360838(-) m6A CDS//exon       28052920//27371828
chr19:39361274-39361275(-) m6A CDS//exon       25456834//27371828//27773536
chr19:39361343-39361344(-) m6A CDS//exon//intron       27371828
chr19:39361520-39361521(-) m6A CDS//exon       27371828//27773536
chr19:39361568-39361569(-) m6A CDS//exon       27371828//27773536
chr19:39361622-39361623(-) m6A CDS//exon       27371828//27773536
chr19:39361727-39361728(-) m6A CDS//exon       27371828
chr19:39361750-39361751(-) m6A CDS//exon       27371828
chr19:39361762-39361763(-) m6A CDS//exon       27371828
chr19:39361789-39361790(-) m6A CDS//exon       27371828
chr19:39361806-39361807(-) m6A CDS//exon       27371828
chr19:39361836-39361837(-) m6A CDS//exon       27371828
chr19:39367044-39367045(-) m6A 5'UTR//CDS//exon//intron       27371828
chr19:39367095-39367096(-) m6A 5'UTR//CDS//exon//intron       27371828
chr19:39367100-39367101(-) m6A 5'UTR//CDS//exon//intron       27371828
chr19:39367109-39367110(-) m6A 5'UTR//CDS//exon//intron       27371828
chr19:39367145-39367146(-) m6A exon//intron       27371828
chr19:39367282-39367283(-) m6A exon//intron       27371828
chr19:39367365-39367366(-) m6A 5'UTR//CDS//exon//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RINL
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H16
Interactor2: RINL

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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