Basic Information:

  VIRBase ID:  

VHID00127457

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          CEP44:  NM_001040157     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	CEP44
miRBase Accession/Entrez ID	MIMAT0014694	80817
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KIAA1712//PS1TP3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CEP44	chr4:175233559(+) A-I      intronic chr4:175251408(+) A-I      intronic chr4:175250337(+) A-I      intronic chr4:175250202(+) A-I      intronic chr4:175250159(+) A-I      intronic chr4:175246597(+) A-I      intronic chr4:175233496(+) A-I      intronic chr4:175233488(+) A-I      intronic chr4:175226462(+) A-I      intronic chr4:175239356(+) A-I      3'UTR chr4:175239332(+) A-I      3'UTR chr4:175239314(+) A-I      3'UTR chr4:175239315(+) A-I      3'UTR chr4:175246771(+) A-I      intronic chr4:175246623(+) A-I      intronic chr4:175250153(+) A-I      intronic chr4:175246691(+) A-I      intronic chr4:175250227(+) A-I      intronic chr4:175250231(+) A-I      intronic chr4:175240147(+) A-I      3'UTR chr4:175250116(+) A-I      intronic chr4:175246549(+) A-I      intronic chr4:175246664(+) A-I      intronic chr4:175246761(+) A-I      intronic chr4:175250299(+) A-I      intronic chr4:175251384(+) A-I      intronic chr4:175250237(+) A-I      intronic chr4:175233502(+) A-I      intronic chr4:175250198(+) A-I      intronic chr4:175211273(+) A-I      intronic chr4:175236858(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CEP44	chr4:175246549(+) A-I intron -    22327324 chr4:175239285(+) G-A intron -    22484847 chr4:175246549(+) A-G intron -    22484847 chr4:175246664(+) A-G intron -    22484847 chr4:175246691(+) A-G intron -    22484847 chr4:175246771(+) A-G intron -    22484847 chr4:175250116(+) A-G intron -    22484847 chr4:175250151(+) A-G intron -    22484847 chr4:175250153(+) A-G intron -    22484847 chr4:175250227(+) A-G intron -    22484847 chr4:175250299(+) A-G intron -    22484847 chr4:175250336(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CEP44	chr4:175204946-175204947(+) m6A 5'UTR       24981863 chr4:175204972-175204973(+) m6A 5'UTR       24981863 chr4:175205111-175205112(+) m6A 5'UTR//intron       24981863 chr4:175205198-175205199(+) m6A 5'UTR//intron       24209618//24981863//22608085 chr4:175238495-175238496(+) m6A CDS//intron       24981863 chr4:175238872-175238873(+) m6A 3'UTR//intron       24981863 chr4:175238896-175238897(+) m6A 3'UTR//intron       24981863 chr4:175238910-175238911(+) m6A 3'UTR//intron       24981863 chr4:175240837-175240838(+) Y 3'UTR//intron       26075521 chr4:175252883-175252884(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CEP44	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: CEP44

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg