Basic Information:

  VIRBase ID:  

VHID00126040

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          SLC43A3:  NM_014096     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	SLC43A3
miRBase Accession/Entrez ID	MIMAT0014694	29015
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EEG1//ENBT1//FOAP-13//PRO1659//SEEEG-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC43A3	chr11:57191026(-) A-I      intronic chr11:57185696(-) A-I      intronic chr11:57191013(-) A-I      intronic chr11:57185910(-) A-I      intronic chr11:57185724(-) A-I      intronic chr11:57181868(-) A-I      intronic chr11:57185636(-) A-I      intronic chr11:57190998(-) A-I      intronic chr11:57191023(-) A-I      intronic chr11:57185750(-) A-I      intronic chr11:57185738(-) A-I      intronic chr11:57190999(-) A-I      intronic chr11:57187186(-) A-I      intronic chr11:57185745(-) A-I      intronic chr11:57185565(-) A-I      intronic chr11:57191039(-) A-I      intronic chr11:57186025(-) A-I      intronic chr11:57185769(-) A-I      intronic chr11:57191007(-) A-I      intronic chr11:57185566(-) A-I      intronic chr11:57187157(-) A-I      intronic chr11:57175776(-) A-I      intronic chr11:57187147(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC43A3	chr11:57174541-57174542(-) m6A 3'UTR//exon       25456834//24981863//28052920//27773535//27371828//22575960 chr11:57174774-57174775(-) m6A 3'UTR//exon       27371828//22575960 chr11:57174803-57174804(-) m6A 3'UTR//exon       27371828//22575960 chr11:57174993-57174994(-) m6A 3'UTR//exon       24209618//28052920//27773535//27371828//22575960 chr11:57175026-57175027(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960 chr11:57175042-57175043(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960 chr11:57175064-57175065(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960 chr11:57175129-57175130(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960 chr11:57175164-57175165(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535//27371828 chr11:57175184-57175185(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535//27371828 chr11:57175201-57175202(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535 chr11:57182090-57182091(-) m6A CDS       22575960 chr11:57182118-57182119(-) m6A CDS       22575960 chr11:57182128-57182129(-) m6A CDS       22575960 chr11:57182416-57182417(-) m6A CDS       22575960 chr11:57182550-57182551(-) m6A CDS       22575960 chr11:57182576-57182577(-) m6A CDS       22575960 chr11:57184086-57184087(-) m6A CDS//exon       22575960 chr11:57184102-57184103(-) m6A CDS//exon       22575960 chr11:57188529-57188530(-) m6A CDS//exon       27773535 chr11:57193038-57193039(-) m6A CDS//exon//intron       27773535//22575960 chr11:57193085-57193086(-) m6A CDS//exon//intron       27773535 chr11:57193142-57193143(-) m6A CDS//exon//intron       27773535//22575960 chr11:57193160-57193161(-) m6A CDS//intron       27773535//22575960 chr11:57193246-57193247(-) m6A 5'UTR//intron       22575960 chr11:57193501-57193502(-) m6A CDS//exon       22575960 chr11:57193681-57193682(-) m6A 5'UTR//exon       22575960 chr11:57193781-57193782(-) m6A 5'UTR//exon       27371828//22575960 chr11:57194219-57194220(-) m6A 5'UTR//intron       - chr11:57194362-57194363(-) m6A 5'UTR//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC43A3	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: SLC43A3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg