Basic Information:

  VIRBase ID:  

VHID00125896

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          RAB11FIP5:  NM_001371272     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	RAB11FIP5
miRBase Accession/Entrez ID	MIMAT0014694	26056
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	gaf-1//GAF1//pp75//rab11-FIP5//RIP11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAB11FIP5	chr2:73333118(-) A-I      intronic chr2:73332598(-) A-I      intronic chr2:73332540(-) A-I      intronic chr2:73332597(-) A-I      intronic chr2:73332583(-) A-I      intronic chr2:73332590(-) A-I      intronic chr2:73332579(-) A-I      intronic chr2:73332538(-) A-I      intronic chr2:73332535(-) A-I      intronic chr2:73332550(-) A-I      intronic chr2:73332545(-) A-I      intronic chr2:73333161(-) A-I      intronic chr2:73333154(-) A-I      intronic chr2:73326270(-) A-I      intronic chr2:73326263(-) A-I      intronic chr2:73326254(-) A-I      intronic chr2:73333158(-) A-I      intronic chr2:73332401(-) A-I      intronic chr2:73327727(-) A-I      intronic chr2:73321127(-) A-I      intronic chr2:73327730(-) A-I      intronic chr2:73327731(-) A-I      intronic chr2:73327721(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB11FIP5	chr2:73302023-73302024(-) m6A 3'UTR//exon       - chr2:73302187-73302188(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535 chr2:73302307-73302308(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr2:73302312-73302313(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr2:73302338-73302339(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr2:73302353-73302354(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr2:73302367-73302368(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr2:73302581-73302582(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:73302612-73302613(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:73302692-73302693(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:73302835-73302836(-) m6A CDS//exon       24284625//27773535//27371828//27773536 chr2:73303136-73303137(-) m6A CDS//exon       27773535//27371828//27773536 chr2:73303197-73303198(-) m6A CDS//exon       27773535//27371828 chr2:73306812-73306813(-) m6A exon//intron       24284625 chr2:73306862-73306863(-) m6A exon//intron       24284625 chr2:73307168-73307169(-) m6A exon//intron       24284625//27773535 chr2:73307298-73307299(-) m6A exon//intron       24981863 chr2:73308413-73308414(-) m6A exon//intron       25456834//24981863//27371828 chr2:73308503-73308504(-) m6A exon//intron       - chr2:73311248-73311249(-) m6A exon//intron       24284625 chr2:73315539-73315540(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828 chr2:73315777-73315778(-) m6A CDS//exon       24284625//25456834//24981863//27371828 chr2:73315832-73315833(-) m6A CDS//exon       24284625//25456834//24981863//27371828 chr2:73315870-73315871(-) m6A CDS//exon       24284625//24981863//27371828//27773536 chr2:73316055-73316056(-) m6A CDS//exon       24284625//27371828//27773536 chr2:73316067-73316068(-) m6A CDS//exon       24284625//27371828//27773536 chr2:73316110-73316111(-) m6A CDS//exon       24284625//27371828//27773536 chr2:73316290-73316291(-) m6A CDS//exon       27773535 chr2:73339927-73339928(-) m6A 5'UTR//intron       24209618//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAB11FIP5	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: RAB11FIP5

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg