Basic Information:

  VIRBase ID:  

VHID00125298

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          MXD4:  NM_006454     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	MXD4
miRBase Accession/Entrez ID	MIMAT0014694	10608
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bHLHc12//MAD4//MST149//MSTP149

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MXD4	chr4:2249366-2249367(-) m6A 3'UTR       27773536 chr4:2249393-2249394(-) m6A 3'UTR       27773536 chr4:2249400-2249401(-) m6A 3'UTR       27773536 chr4:2249611-2249612(-) m6A 3'UTR       24284625//27773535 chr4:2249623-2249624(-) m6A 3'UTR       24284625//27773535 chr4:2249688-2249689(-) m6A 3'UTR       24284625//27773535 chr4:2250246-2250247(-) m6A 3'UTR       27371828//27773536 chr4:2250406-2250407(-) Y 3'UTR       26075521 chr4:2250663-2250664(-) m6A 3'UTR       24284625//25456834//22608085 chr4:2250682-2250683(-) m6A 3'UTR       24284625//25456834//22608085 chr4:2250688-2250689(-) Y 3'UTR       26075521 chr4:2251021-2251022(-) m6A 3'UTR       24284625 chr4:2251147-2251148(-) m6A 3'UTR       24284625//24981863//22608085 chr4:2251176-2251177(-) m6A 3'UTR       24284625//24981863//22608085 chr4:2251559-2251560(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr4:2251593-2251594(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr4:2251623-2251624(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr4:2251698-2251699(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr4:2251759-2251760(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr4:2251783-2251784(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr4:2251868-2251869(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr4:2251901-2251902(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr4:2251952-2251953(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr4:2252385-2252386(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr4:2252421-2252422(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr4:2252956-2252957(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536//22608085 chr4:2252970-2252971(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536//22608085 chr4:2254239-2254240(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828//27773536 chr4:2254304-2254305(-) m6A exon//intron       24284625//27773536 chr4:2256592-2256593(-) m6A exon//intron       24284625//24209618//24981863//22608085 chr4:2256624-2256625(-) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr4:2256689-2256690(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr4:2256722-2256723(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr4:2256753-2256754(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr4:2256761-2256762(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr4:2256815-2256816(-) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr4:2256928-2256929(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085 chr4:2256945-2256946(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr4:2257018-2257019(-) m6A 3'UTR//CDS//exon//intron       24209618//27773535 chr4:2257043-2257044(-) m6A CDS//intron       24209618//27773535//27773536 chr4:2260614-2260615(-) m6A 3'UTR//intron       24209618//27773535//27773536 chr4:2260731-2260732(-) m6A CDS//intron       24209618//27773536 chr4:2263457-2263458(-) m6A CDS//exon       24209618//27773536 chr4:2263491-2263492(-) m6A CDS//exon       24209618//27773536 chr4:2263696-2263697(-) m6A CDS//exon       24209618//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MXD4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: MXD4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg