Basic Information:

  VIRBase ID:  

VHID00124755

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H16:  MIMAT0014694          TNFSF9:  NM_003811     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H16	TNFSF9
miRBase Accession/Entrez ID	MIMAT0014694	8744
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	4-1BB-L//CD137L//TNLG5A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TNFSF9	chr19:6535717(+) A-I      3'UTR chr19:6535806(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TNFSF9	chr19:6535728(+) G-T intron -    22484847 chr19:6535872(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNFSF9	chr19:6531075-6531076(+) m6A CDS       24981863 chr19:6531303-6531304(+) m6A CDS       22575960 chr19:6534697-6534698(+) m6A CDS       24284625//22575960 chr19:6534862-6534863(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:6534892-6534893(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:6535019-6535020(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:6535052-6535053(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:6535104-6535105(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:6535138-6535139(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr19:6535218-6535219(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr19:6535249-6535250(+) m6A 3'UTR       24284625//24981863//22608085 chr19:6535349-6535350(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:6535412-6535413(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:6535420-6535421(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:6535561-6535562(+) m6A 3'UTR       24284625//24209618//24981863 chr19:6535575-6535576(+) m6A 3'UTR       24981863 chr19:6535620-6535621(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TNFSF9	Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H16
Interactor2: TNFSF9

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg