Basic Information:

  VIRBase ID:  

VHID00122265

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          LGI4:  NM_139284     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	LGI4
miRBase Accession/Entrez ID	MIMAT0014693	163175
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AMC1//AMCNMY//LGIL3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LGI4	chr19:35618312(-) A-I      intronic chr19:35618286(-) A-I      intronic chr19:35618303(-) A-I      intronic chr19:35618264(-) A-I      intronic chr19:35618317(-) A-I      intronic chr19:35618157(-) A-I      intronic chr19:35618288(-) A-I      intronic chr19:35621479(-) A-I      intronic chr19:35618335(-) A-I      intronic chr19:35618331(-) A-I      intronic chr19:35618308(-) A-I      intronic chr19:35618297(-) A-I      intronic chr19:35621549(-) A-I      intronic chr19:35621423(-) A-I      intronic chr19:35621359(-) A-I      intronic chr19:35618284(-) A-I      intronic chr19:35618204(-) A-I      intronic chr19:35618562(-) A-I      intronic chr19:35618237(-) A-I      intronic chr19:35621562(-) A-I      intronic chr19:35618407(-) A-I      intronic chr19:35618443(-) A-I      intronic chr19:35618563(-) A-I      intronic chr19:35618430(-) A-I      intronic chr19:35618403(-) A-I      intronic chr19:35619421(-) A-I      intronic chr19:35618352(-) A-I      intronic chr19:35618336(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LGI4	chr19:35615860-35615861(-) m6A 3'UTR//exon//intron       25456834//24981863 chr19:35615899-35615900(-) m6A 3'UTR//exon//intron       25456834//24981863 chr19:35615923-35615924(-) m6A 3'UTR//exon//intron       25456834//24981863 chr19:35616082-35616083(-) m6A 3'UTR//exon//intron       25456834 chr19:35616094-35616095(-) m6A 3'UTR//exon//intron       25456834 chr19:35616920-35616921(-) m6A 3'UTR//intron       25456834 chr19:35617008-35617009(-) m6A 3'UTR//intron       25456834 chr19:35617040-35617041(-) m6A 3'UTR//intron       25456834 chr19:35617064-35617065(-) m6A 3'UTR//intron       25456834 chr19:35617070-35617071(-) m6A 3'UTR//intron       25456834 chr19:35617102-35617103(-) m6A CDS//intron       25456834 chr19:35617180-35617181(-) m6A CDS//exon//intron       25456834 chr19:35617267-35617268(-) m6A CDS//exon//intron       25456834 chr19:35625751-35625752(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625759-35625760(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625768-35625769(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625780-35625781(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625796-35625797(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625804-35625805(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625836-35625837(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625848-35625849(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625854-35625855(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625870-35625871(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625896-35625897(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625918-35625919(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625930-35625931(-) m6A 5'UTR//intron       24981863//27773535 chr19:35625966-35625967(-) m6A 5'UTR//intron       24981863 chr19:35625981-35625982(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LGI4	Exosome Blood     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: LGI4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg