Basic Information:

  VIRBase ID:  

VHID00122237

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          FAM53A:  NM_001013622     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	FAM53A
miRBase Accession/Entrez ID	MIMAT0014693	152877
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DNTNP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM53A	chr4:1652355(-) A-I      intronic chr4:1649898(-) A-I      intronic chr4:1649892(-) A-I      intronic chr4:1649890(-) A-I      intronic chr4:1649889(-) A-I      intronic chr4:1649886(-) A-I      intronic chr4:1680029(-) A-I      intronic chr4:1668573(-) A-I      intronic chr4:1674625(-) A-I      intronic chr4:1649753(-) A-I      intronic chr4:1645567(-) A-I      intronic chr4:1683067(-) A-I      intronic chr4:1682962(-) A-I      intronic chr4:1682900(-) A-I      intronic chr4:1680516(-) A-I      intronic chr4:1680511(-) A-I      intronic chr4:1680330(-) A-I      intronic chr4:1679626(-) A-I      intronic chr4:1675423(-) A-I      intronic chr4:1675414(-) A-I      intronic chr4:1675280(-) A-I      intronic chr4:1675338(-) A-I      intronic chr4:1679492(-) A-I      intronic chr4:1679550(-) A-I      intronic chr4:1680024(-) A-I      intronic chr4:1649023(-) A-I      intronic chr4:1680381(-) A-I      intronic chr4:1682994(-) A-I      intronic chr4:1683044(-) A-I      intronic chr4:1683509(-) A-I      intronic chr4:1652393(-) A-I      intronic chr4:1652392(-) A-I      intronic chr4:1652361(-) A-I      intronic chr4:1680298(-) A-I      intronic chr4:1679625(-) A-I      intronic chr4:1679585(-) A-I      intronic chr4:1652861(-) A-I      intronic chr4:1676207(-) A-I      intronic chr4:1679961(-) A-I      intronic chr4:1659876(-) A-I      intronic chr4:1675457(-) A-I      intronic chr4:1683525(-) A-I      intronic chr4:1652351(-) A-I      intronic chr4:1682891(-) A-I      intronic chr4:1680394(-) A-I      intronic chr4:1645566(-) A-I      intronic chr4:1675204(-) A-I      intronic chr4:1648879(-) A-I      intronic chr4:1679916(-) A-I      intronic chr4:1679984(-) A-I      intronic chr4:1659811(-) A-I      intronic chr4:1681019(-) A-I      intronic chr4:1674679(-) A-I      intronic chr4:1680023(-) A-I      intronic chr4:1680020(-) A-I      intronic chr4:1682961(-) A-I      intronic chr4:1674634(-) A-I      intronic chr4:1683429(-) A-I      intronic chr4:1645467(-) A-I      intronic chr4:1660020(-) A-I      intronic chr4:1681610(-) A-I      intronic chr4:1680292(-) A-I      intronic chr4:1649932(-) A-I      intronic chr4:1675456(-) A-I      intronic chr4:1674776(-) A-I      intronic chr4:1653147(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM53A	chr4:1643026-1643027(-) m6A 3'UTR//CDS//intron       24284625//25456834 chr4:1643044-1643045(-) m6A 3'UTR//CDS//intron       24284625//25456834 chr4:1643092-1643093(-) m6A 3'UTR//CDS//intron       24284625//25456834 chr4:1643107-1643108(-) m6A 3'UTR//CDS//intron       24284625//25456834 chr4:1643183-1643184(-) m6A 3'UTR//CDS//intron       24284625 chr4:1656723-1656724(-) m6A CDS       27773536 chr4:1656739-1656740(-) m6A CDS       24284625//27773536 chr4:1656999-1657000(-) m6A CDS       27773536 chr4:1657150-1657151(-) m6A CDS       25456834//27773536//22608085 chr4:1657208-1657209(-) m6A CDS       25456834//27773536//22608085 chr4:1657275-1657276(-) m6A CDS       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM53A	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: FAM53A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg