Basic Information:

  VIRBase ID:  

VHID00122201

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          C19orf25:  NM_152482     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	C19orf25
miRBase Accession/Entrez ID	MIMAT0014693	148223
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C19orf25	chr19:1476861(-) A-I      intronic chr19:1475644(-) A-I      intronic chr19:1475641(-) A-I      intronic chr19:1475581(-) A-I      intronic chr19:1475573(-) A-I      intronic chr19:1478477(-) A-I      intronic chr19:1478476(-) A-I      intronic chr19:1478388(-) A-I      intronic chr19:1475674(-) A-I      intronic chr19:1476814(-) A-I      intronic chr19:1476847(-) A-I      intronic chr19:1478540(-) A-I      intronic chr19:1478378(-) A-I      intronic chr19:1475605(-) A-I      intronic chr19:1476888(-) A-I      intronic chr19:1475682(-) A-I      intronic chr19:1475515(-) A-I      intronic chr19:1476887(-) A-I      intronic chr19:1475626(-) A-I      intronic chr19:1476740(-) A-I      intronic chr19:1477137(-) A-I      intronic chr19:1475612(-) A-I      intronic chr19:1475540(-) A-I      intronic chr19:1475566(-) A-I      intronic chr19:1476842(-) A-I      intronic chr19:1478114(-) A-I      intronic chr19:1477174(-) A-I      intronic chr19:1475564(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C19orf25	chr19:1475513(-) A-G intron -    22484847 chr19:1475564(-) A-G intron -    22484847 chr19:1475682(-) A-G intron -    22484847 chr19:1476904(-) A-G intron -    22484847 chr19:1478434(-) C-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C19orf25	chr19:1461275-1461276(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:1461368-1461369(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chr19:1461449-1461450(-) m6A 3'UTR       24284625//24209618//24981863//22608085 chr19:1461724-1461725(-) m6A 3'UTR       24209618 chr19:1461731-1461732(-) m6A 3'UTR       24209618 chr19:1473201-1473202(-) m6A 3'UTR//intron       24209618//27773535 chr19:1473287-1473288(-) m6A 3'UTR//intron       27773535 chr19:1473297-1473298(-) m6A 3'UTR//intron       27773535 chr19:1473382-1473383(-) m6A 3'UTR//intron       27773535 chr19:1473868-1473869(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr19:1473897-1473898(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr19:1473903-1473904(-) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr19:1474002-1474003(-) m6A 3'UTR//intron       25456834//24981863//22608085 chr19:1474030-1474031(-) m6A 3'UTR//intron       24284625//25456834 chr19:1474050-1474051(-) m6A 3'UTR//intron       24284625 chr19:1474085-1474086(-) m6A 3'UTR//intron       24284625 chr19:1474465-1474466(-) m6A 3'UTR//exon//intron       - chr19:1474780-1474781(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27773536//22608085 chr19:1474846-1474847(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:1474951-1474952(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:1475100-1475101(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:1475256-1475257(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27371828//27773536 chr19:1475341-1475342(-) m6A 3'UTR//exon//intron       24284625//27773536 chr19:1475351-1475352(-) m6A 3'UTR//exon//intron       24284625//27773536 chr19:1475377-1475378(-) m6A 3'UTR//exon//intron       24284625 chr19:1478671-1478672(-) m6A CDS//exon//intron       27773536 chr19:1478733-1478734(-) m6A CDS//exon//intron       24209618//27773536 chr19:1478740-1478741(-) m6A CDS//exon//intron       24209618//27773536 chr19:1479002-1479003(-) m6A 5'UTR//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C19orf25	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: C19orf25

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg