Basic Information:

  VIRBase ID:  

VHID00121684

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          SH3BP5L:  NM_030645     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	SH3BP5L
miRBase Accession/Entrez ID	MIMAT0014693	80851
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SH3BP5L	chr1:249109764(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SH3BP5L	chr1:249104755-249104756(-) m6A 3'UTR//exon       25456834//24981863//27773535 chr1:249104784-249104785(-) m6A 3'UTR//exon       25456834//24981863//27773535 chr1:249104831-249104832(-) m6A 3'UTR//exon       24284625//25456834//27773535 chr1:249104922-249104923(-) m6A 3'UTR//exon       24284625//27773535 chr1:249105373-249105374(-) m6A 3'UTR//exon       25456834//27773535 chr1:249105415-249105416(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960 chr1:249105454-249105455(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr1:249105523-249105524(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:249105672-249105673(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr1:249105749-249105750(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr1:249106204-249106205(-) m6A CDS//exon       24284625//24209618//25456834//27371828//27773536//22575960 chr1:249106249-249106250(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:249106366-249106367(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:249106381-249106382(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:249106389-249106390(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr1:249106545-249106546(-) m6A CDS//exon       24284625//27773535//27371828//27773536 chr1:249107258-249107259(-) m6A CDS//exon       24284625//27371828//27773536 chr1:249107404-249107405(-) m6A exon//intron       24284625//27773535//27371828 chr1:249108663-249108664(-) m6A CDS//exon       24284625//27371828 chr1:249108687-249108688(-) m6A CDS//exon       24284625//27371828 chr1:249108696-249108697(-) m6A CDS//exon       24284625//27371828 chr1:249108796-249108797(-) m6A CDS//exon       24284625//27773535//27371828 chr1:249110813-249110814(-) m6A CDS//exon       24209618//27773535//27371828 chr1:249110851-249110852(-) m6A CDS//exon       24209618//24981863//27773535//27371828 chr1:249111032-249111033(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828 chr1:249111063-249111064(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828 chr1:249111249-249111250(-) m6A intron       27773535//27371828 chr1:249114678-249114679(-) m6A exon//intron       - chr1:249118969-249118970(-) m6A CDS//exon       24981863//27371828 chr1:249119097-249119098(-) m6A CDS//exon       24284625//24981863//27773535//27371828//27773536 chr1:249119119-249119120(-) m6A CDS//exon       24284625//27371828//27773536 chr1:249119238-249119239(-) m6A 5'UTR//exon       24284625//27773535 chr1:249119322-249119323(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085 chr1:249119342-249119343(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085 chr1:249119354-249119355(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:249119378-249119379(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr1:249120236-249120237(-) m6A 5'UTR       27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SH3BP5L	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: SH3BP5L

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg