Basic Information:

  VIRBase ID:  

VHID00121525

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          GDAP1L1:  NM_001256739     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	GDAP1L1
miRBase Accession/Entrez ID	MIMAT0014693	78997
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ881L22.1//dJ995J12.1.1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GDAP1L1	chr20:42904733(+) A-I      intronic chr20:42904746(+) A-I      intronic chr20:42904747(+) A-I      intronic chr20:42904791(+) A-I      intronic chr20:42904766(+) A-I      intronic chr20:42904761(+) A-I      intronic chr20:42904783(+) A-I      intronic chr20:42904784(+) A-I      intronic chr20:42904760(+) A-I      intronic chr20:42899770(+) A-I      intronic chr20:42899717(+) A-I      intronic chr20:42877841(+) A-I      intronic chr20:42884127(+) A-I      intronic chr20:42903770(+) A-I      intronic chr20:42906774(+) A-I      intronic chr20:42906593(+) A-I      intronic chr20:42905804(+) A-I      intronic chr20:42904797(+) A-I      intronic chr20:42907069(+) A-I      intronic chr20:42884032(+) A-I      intronic chr20:42898316(+) A-I      intronic chr20:42880888(+) A-I      intronic chr20:42881025(+) A-I      intronic chr20:42884094(+) A-I      intronic chr20:42877875(+) A-I      intronic chr20:42903613(+) A-I      intronic chr20:42906744(+) A-I      intronic chr20:42904854(+) A-I      intronic chr20:42907256(+) A-I      intronic chr20:42883991(+) A-I      intronic chr20:42905881(+) A-I      intronic chr20:42903705(+) A-I      intronic chr20:42898520(+) A-I      intronic chr20:42877817(+) A-I      intronic chr20:42898451(+) A-I      intronic chr20:42881124(+) A-I      intronic chr20:42904871(+) A-I      intronic chr20:42883924(+) A-I      intronic chr20:42877861(+) A-I      intronic chr20:42906706(+) A-I      intronic chr20:42880890(+) A-I      intronic chr20:42899084(+) A-I      intronic chr20:42885108(+) A-I      intronic chr20:42881046(+) A-I      intronic chr20:42877913(+) A-I      intronic chr20:42883980(+) A-I      intronic chr20:42904896(+) A-I      intronic chr20:42883926(+) A-I      intronic chr20:42883918(+) A-I      intronic chr20:42907125(+) A-I      intronic chr20:42907147(+) A-I      intronic chr20:42884031(+) A-I      intronic chr20:42884026(+) A-I      intronic chr20:42881200(+) A-I      intronic chr20:42899656(+) A-I      intronic chr20:42881187(+) A-I      intronic chr20:42895994(+) A-I      intronic chr20:42877940(+) A-I      intronic chr20:42884062(+) A-I      intronic chr20:42896235(+) A-I      intronic chr20:42877946(+) A-I      intronic chr20:42877899(+) A-I      intronic chr20:42903662(+) A-I      intronic chr20:42906726(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GDAP1L1	chr20:42908027-42908028(+) m6A 3'UTR//intron       25456834//27773535 chr20:42908035-42908036(+) m6A 3'UTR//intron       25456834//27773535 chr20:42908084-42908085(+) m6A 3'UTR//intron       25456834//27773535 chr20:42908180-42908181(+) m6A 3'UTR//intron       25456834 chr20:42908187-42908188(+) m6A 3'UTR//intron       25456834 chr20:42908194-42908195(+) m6A 3'UTR//intron       25456834 chr20:42908235-42908236(+) m6A 3'UTR//CDS       25456834 chr20:42908244-42908245(+) m6A 3'UTR//CDS       25456834 chr20:42908315-42908316(+) m6A 3'UTR//intron       25456834 chr20:42908362-42908363(+) m6A 3'UTR//CDS       25456834 chr20:42908375-42908376(+) m6A 3'UTR//CDS       25456834 chr20:42908392-42908393(+) m6A 3'UTR//CDS       25456834 chr20:42908440-42908441(+) m6A 3'UTR       25456834 chr20:42908490-42908491(+) m6A 3'UTR       25456834 chr20:42908496-42908497(+) m6A 3'UTR       25456834 chr20:42908528-42908529(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GDAP1L1	Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: GDAP1L1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg