Basic Information:

  VIRBase ID:  

VHID00121516

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          COA7:  NM_023077     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	COA7
miRBase Accession/Entrez ID	MIMAT0014693	65260
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf163//RESA1//SCAN3//SELRC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COA7	chr1:53156915(-) A-I      intronic chr1:53162653(-) A-I      intronic chr1:53156912(-) A-I      intronic chr1:53152225(-) A-I      3'UTR chr1:53159081(-) A-I      intronic chr1:53156591(-) A-I      intronic chr1:53155394(-) A-I      intronic chr1:53156682(-) A-I      intronic chr1:53157272(-) A-I      intronic chr1:53156681(-) A-I      intronic chr1:53156660(-) A-I      intronic chr1:53155405(-) A-I      intronic chr1:53152349(-) A-I      3'UTR chr1:53157268(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COA7	chr1:53152525-53152526(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:53152556-53152557(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:53152582-53152583(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:53152693-53152694(-) m6A 3'UTR       24284625//27773535//22608085 chr1:53152720-53152721(-) m6A 3'UTR       24284625//27773535 chr1:53152885-53152886(-) m6A 3'UTR       27773535 chr1:53152892-53152893(-) m6A 3'UTR       27773535 chr1:53152957-53152958(-) Y 3'UTR       26075521 chr1:53153066-53153067(-) m6A 3'UTR       27773535 chr1:53153097-53153098(-) m6A 3'UTR       27773535 chr1:53153280-53153281(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:53153287-53153288(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:53153328-53153329(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153361-53153362(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153427-53153428(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153581-53153582(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153587-53153588(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153680-53153681(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153724-53153725(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr1:53153824-53153825(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:53158426-53158427(-) m6A CDS//exon       24284625//24209618//25456834//27773535//27371828//22575960//22608085 chr1:53158451-53158452(-) m6A CDS//exon       24284625//24209618//27773535//22575960//22608085 chr1:53158520-53158521(-) m6A CDS//exon       24284625//24209618//27773535 chr1:53163637-53163638(-) m6A exon//intron       27773535 chr1:53163646-53163647(-) m6A exon//intron       27773535 chr1:53163665-53163666(-) m6A exon//intron       27773535 chr1:53163723-53163724(-) m6A exon//intron       24981863 chr1:53163900-53163901(-) m6A CDS       24981863 chr1:53163942-53163943(-) m6A CDS       24981863 chr1:53163981-53163982(-) m6A CDS       24981863 chr1:53164000-53164001(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COA7	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: COA7

Evidence Support:

Prediction-Evidence	miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg