Basic Information:

  VIRBase ID:  

VHID00121467

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          HS1BP3:  NM_022460     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	HS1BP3
miRBase Accession/Entrez ID	MIMAT0014693	64342
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ETM2//HS1-BP3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HS1BP3	chr2:20821260(-) A-I      intronic chr2:20830279(-) A-I      intronic chr2:20830280(-) A-I      intronic chr2:20818285(-) A-I      3'UTR chr2:20828267(-) A-I      intronic chr2:20828273(-) A-I      intronic chr2:20830128(-) A-I      intronic chr2:20830118(-) A-I      intronic chr2:20830242(-) A-I      intronic chr2:20831163(-) A-I      intronic chr2:20831207(-) A-I      intronic chr2:20831199(-) A-I      intronic chr2:20830151(-) A-I      intronic chr2:20831215(-) A-I      intronic chr2:20831017(-) A-I      intronic chr2:20830102(-) A-I      intronic chr2:20830271(-) A-I      intronic chr2:20833556(-) A-I      intronic chr2:20828246(-) A-I      intronic chr2:20830068(-) A-I      intronic chr2:20828247(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HS1BP3	chr2:20790758-20790759(-) m6A intron       24209618 chr2:20792214-20792215(-) m6A intron       27773535 chr2:20792269-20792270(-) m6A intron       27773535 chr2:20792436-20792437(-) m6A 3'UTR//intron       24209618//27773535 chr2:20792456-20792457(-) m6A 3'UTR//intron       24209618//27773535 chr2:20792538-20792539(-) m6A 3'UTR//intron       27773535 chr2:20798000-20798001(-) m6A CDS//intron       27773535 chr2:20798019-20798020(-) m6A CDS//intron       27773535 chr2:20818428-20818429(-) m6A 3'UTR//intron       25456834//24981863 chr2:20818496-20818497(-) m6A 3'UTR//intron       24209618//25456834//24981863 chr2:20818607-20818608(-) m6A 3'UTR//intron       24209618//25456834//24981863//22608085 chr2:20818660-20818661(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr2:20818681-20818682(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr2:20818702-20818703(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//22608085 chr2:20818786-20818787(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:20818807-20818808(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:20818896-20818897(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr2:20818956-20818957(-) m6A CDS//intron       24284625//24981863//27773535//27371828//27773536 chr2:20818975-20818976(-) m6A CDS//intron       24284625//24981863//27773535//27371828//27773536 chr2:20818987-20818988(-) m6A CDS//intron       24284625//27773535//27371828//27773536 chr2:20818993-20818994(-) m6A CDS//intron       24284625//27773535//27371828//27773536 chr2:20821978-20821979(-) m6A 3'UTR//intron       27773535//27371828//27773536 chr2:20823430-20823431(-) m6A 3'UTR//intron       24981863 chr2:20824493-20824494(-) m6A CDS       27773535//27773536 chr2:20824520-20824521(-) m6A CDS       27773535//27773536 chr2:20824568-20824569(-) m6A CDS       - chr2:20824633-20824634(-) m6A CDS       24284625 chr2:20834529-20834530(-) m6A 3'UTR//intron       - chr2:20838297-20838298(-) m6A 5'UTR//CDS       25456834//27773535//27773536 chr2:20838340-20838341(-) m6A 5'UTR//CDS       27773535//27773536 chr2:20838348-20838349(-) m6A 5'UTR//CDS       27773535//27773536 chr2:20839807-20839808(-) m6A 3'UTR//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HS1BP3	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: HS1BP3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg