Basic Information:

  VIRBase ID:  

VHID00121405

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          CTDSP1:  NM_001206878     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	CTDSP1
miRBase Accession/Entrez ID	MIMAT0014693	58190
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NIF3//NLI-IF//NLIIF//SCP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CTDSP1	chr2:219267288(+) A-I      intronic chr2:219268582(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CTDSP1	chr2:219263621(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CTDSP1	chr2:219263196-219263197(+) m6A CDS//intron       - chr2:219263498-219263499(+) m6A exon//intron       - chr2:219263529-219263530(+) m6A exon//intron       - chr2:219263550-219263551(+) m6A exon//intron       - chr2:219263562-219263563(+) m6A exon//intron       - chr2:219263601-219263602(+) m6A exon//intron       - chr2:219263607-219263608(+) m6A exon//intron       - chr2:219263880-219263881(+) m6A exon//intron       - chr2:219263895-219263896(+) m6A exon//intron       - chr2:219264167-219264168(+) m6A exon//intron       24981863 chr2:219264179-219264180(+) m6A exon//intron       24981863 chr2:219264612-219264613(+) m6A 5'UTR//intron       24981863 chr2:219264668-219264669(+) m6A 5'UTR//exon//intron       24981863 chr2:219264817-219264818(+) m6A CDS//exon//intron       - chr2:219265036-219265037(+) m6A CDS//intron       - chr2:219265593-219265594(+) m6A CDS//exon//intron       - chr2:219265656-219265657(+) m6A CDS//intron       - chr2:219265787-219265788(+) m6A exon//intron       - chr2:219265808-219265809(+) m6A exon//intron       - chr2:219265891-219265892(+) m6A exon//intron       - chr2:219266023-219266024(+) m6A exon//intron       - chr2:219266836-219266837(+) m6A CDS//exon       22575960 chr2:219266876-219266877(+) m6A CDS//exon       22575960 chr2:219266882-219266883(+) m6A CDS//exon       22575960 chr2:219266914-219266915(+) m6A CDS//exon       22575960 chr2:219268099-219268100(+) m6A CDS//exon       24284625 chr2:219268132-219268133(+) m6A CDS//exon       24284625 chr2:219268155-219268156(+) m6A exon//intron       24284625 chr2:219268161-219268162(+) m6A exon//intron       24284625 chr2:219268167-219268168(+) m6A exon//intron       24284625 chr2:219268179-219268180(+) m6A exon//intron       24284625 chr2:219269167-219269168(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr2:219269209-219269210(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr2:219269233-219269234(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr2:219269329-219269330(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr2:219269364-219269365(+) m6A 3'UTR//exon       24284625//25456834//22575960 chr2:219269387-219269388(+) m6A 3'UTR//exon       24284625//22575960 chr2:219269514-219269515(+) m6A 3'UTR       24284625 chr2:219269536-219269537(+) m6A 3'UTR       24284625 chr2:219269614-219269615(+) m6A 3'UTR       - chr2:219269650-219269651(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CTDSP1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: CTDSP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg