Basic Information:

  VIRBase ID:  

VHID00121313

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          NCLN:  NM_001321463     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	NCLN
miRBase Accession/Entrez ID	MIMAT0014693	56926
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NET59

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NCLN	chr19:3207098(+) A-I      intronic chr19:3207109(+) A-I      intronic chr19:3207118(+) A-I      intronic chr19:3195121(+) A-I      intronic chr19:3195015(+) A-I      intronic chr19:3197539(+) A-I      intronic chr19:3194309(+) A-I      intronic chr19:3194226(+) A-I      intronic chr19:3194219(+) A-I      intronic chr19:3194216(+) A-I      intronic chr19:3206632(+) A-I      intronic chr19:3206635(+) A-I      intronic chr19:3206596(+) A-I      intronic chr19:3207075(+) A-I      intronic chr19:3197459(+) A-I      intronic chr19:3197483(+) A-I      intronic chr19:3197513(+) A-I      intronic chr19:3197514(+) A-I      intronic chr19:3197744(+) A-I      intronic chr19:3197748(+) A-I      intronic chr19:3197802(+) A-I      intronic chr19:3198301(+) A-I      intronic chr19:3198353(+) A-I      intronic chr19:3199763(+) A-I      intronic chr19:3199760(+) A-I      intronic chr19:3198470(+) A-I      intronic chr19:3207056(+) A-I      intronic chr19:3206956(+) A-I      intronic chr19:3206605(+) A-I      intronic chr19:3203064(+) A-I      intronic chr19:3199838(+) A-I      intronic chr19:3199779(+) A-I      intronic chr19:3198465(+) A-I      intronic chr19:3198391(+) A-I      intronic chr19:3207043(+) A-I      intronic chr19:3198354(+) A-I      intronic chr19:3194200(+) A-I      intronic chr19:3194227(+) A-I      intronic chr19:3194266(+) A-I      intronic chr19:3194269(+) A-I      intronic chr19:3195011(+) A-I      intronic chr19:3195065(+) A-I      intronic chr19:3195132(+) A-I      intronic chr19:3195334(+) A-I      intronic chr19:3195384(+) A-I      intronic chr19:3195397(+) A-I      intronic chr19:3195645(+) A-I      intronic chr19:3195695(+) A-I      intronic chr19:3195738(+) A-I      intronic chr19:3194302(+) A-I      intronic chr19:3206619(+) A-I      intronic chr19:3203121(+) A-I      intronic chr19:3195432(+) A-I      intronic chr19:3195057(+) A-I      intronic chr19:3195322(+) A-I      intronic chr19:3197533(+) A-I      intronic chr19:3194177(+) A-I      intronic chr19:3195165(+) A-I      intronic chr19:3194260(+) A-I      intronic chr19:3194387(+) A-I      intronic chr19:3195669(+) A-I      intronic chr19:3203056(+) A-I      intronic chr19:3206687(+) A-I      intronic chr19:3198317(+) A-I      intronic chr19:3194943(+) A-I      intronic chr19:3207031(+) A-I      intronic chr19:3194922(+) A-I      intronic chr19:3195651(+) A-I      intronic chr19:3206624(+) A-I      intronic chr19:3195162(+) A-I      intronic chr19:3195125(+) A-I      intronic chr19:3195721(+) A-I      intronic chr19:3206638(+) A-I      intronic chr19:3194336(+) A-I      intronic chr19:3194326(+) A-I      intronic chr19:3206759(+) A-I      intronic chr19:3198351(+) A-I      intronic chr19:3206648(+) A-I      intronic chr19:3206633(+) A-I      intronic chr19:3197736(+) A-I      intronic chr19:3206657(+) A-I      intronic chr19:3195649(+) A-I      intronic chr19:3195311(+) A-I      intronic chr19:3195458(+) A-I      intronic chr19:3206782(+) A-I      intronic chr19:3195291(+) A-I      intronic chr19:3206713(+) A-I      intronic chr19:3200448(+) A-I      intronic chr19:3206614(+) A-I      intronic chr19:3194168(+) A-I      intronic chr19:3198394(+) A-I      intronic chr19:3203094(+) A-I      intronic chr19:3195312(+) A-I      intronic chr19:3206959(+) A-I      intronic chr19:3198384(+) A-I      intronic chr19:3206972(+) A-I      intronic chr19:3194224(+) A-I      intronic chr19:3194192(+) A-I      intronic chr19:3197893(+) A-I      intronic chr19:3199972(+) A-I      intronic chr19:3194338(+) A-I      intronic chr19:3207057(+) A-I      intronic chr19:3207005(+) A-I      intronic chr19:3195387(+) A-I      intronic chr19:3206875(+) A-I      intronic chr19:3195509(+) A-I      intronic chr19:3194370(+) A-I      intronic chr19:3197758(+) A-I      intronic chr19:3206561(+) A-I      intronic chr19:3194994(+) A-I      intronic chr19:3195328(+) A-I      intronic chr19:3194202(+) A-I      intronic chr19:3195112(+) A-I      intronic chr19:3194234(+) A-I      intronic chr19:3197463(+) A-I      intronic chr19:3194813(+) A-I      intronic chr19:3198450(+) A-I      intronic chr19:3206658(+) A-I      intronic chr19:3207002(+) A-I      intronic chr19:3195051(+) A-I      intronic chr19:3206647(+) A-I      intronic chr19:3194301(+) A-I      intronic chr19:3194229(+) A-I      intronic chr19:3207074(+) A-I      intronic chr19:3206965(+) A-I      intronic chr19:3197479(+) A-I      intronic chr19:3194972(+) A-I      intronic chr19:3207044(+) A-I      intronic chr19:3194261(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NCLN	chr19:3195051(+) A-I intron -    21960545 chr19:3195057(+) A-I intron -    21960545 chr19:3206707(+) A-I intron -    21960545 chr19:3206714(+) A-I intron -    21960545 chr19:3194336(+) A-G intron -    22484847 chr19:3194338(+) A-G intron -    22484847 chr19:3194894(+) A-G intron -    22484847 chr19:3194994(+) A-G intron -    22484847 chr19:3195051(+) A-G intron -    22484847 chr19:3195112(+) A-G intron -    22484847 chr19:3195162(+) A-G intron -    22484847 chr19:3195311(+) A-G intron -    22484847 chr19:3195322(+) A-G intron -    22484847 chr19:3195446(+) A-G intron -    22484847 chr19:3195454(+) A-G intron -    22484847 chr19:3195649(+) A-G intron -    22484847 chr19:3195721(+) A-G intron -    22484847 chr19:3200310(+) A-T intron -    22484847 chr19:3206959(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NCLN	chr19:3185888-3185889(+) m6A 5'UTR       24981863 chr19:3185930-3185931(+) m6A 5'UTR       24209618//24981863 chr19:3186059-3186060(+) m6A CDS//intron       24209618 chr19:3192488-3192489(+) m6A 5'UTR//CDS//intron       - chr19:3192554-3192555(+) m6A CDS//intron       24284625 chr19:3193320-3193321(+) m6A CDS//intron       24284625//22575960 chr19:3193338-3193339(+) Y CDS//intron       26075521 chr19:3193380-3193381(+) m6A CDS//intron       24284625//22575960 chr19:3198842-3198843(+) m6A CDS       24284625 chr19:3201539-3201540(+) m6A CDS       24284625 chr19:3203805-3203806(+) m6A CDS       24284625//22575960 chr19:3203824-3203825(+) m6A CDS       24284625//22575960 chr19:3203833-3203834(+) m6A CDS       24284625//22575960 chr19:3204020-3204021(+) m6A CDS       22575960 chr19:3204047-3204048(+) m6A CDS       22575960 chr19:3205914-3205915(+) m6A 3'UTR//intron       24284625 chr19:3205955-3205956(+) m6A 3'UTR//CDS       24284625 chr19:3206152-3206153(+) m6A 3'UTR//CDS       24284625 chr19:3206162-3206163(+) m6A 3'UTR//CDS       24284625 chr19:3206281-3206282(+) m6A 3'UTR//CDS       24284625 chr19:3206293-3206294(+) m6A 3'UTR//CDS       24284625//22575960 chr19:3206332-3206333(+) m6A 3'UTR//CDS       24284625//22575960 chr19:3206338-3206339(+) m6A 3'UTR//CDS       24284625//22575960 chr19:3207197-3207198(+) m6A 3'UTR//CDS       24284625//22575960 chr19:3207647-3207648(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr19:3207677-3207678(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207753-3207754(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207784-3207785(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207818-3207819(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207856-3207857(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207894-3207895(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3207941-3207942(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208028-3208029(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208086-3208087(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208160-3208161(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208628-3208629(+) m6A 3'UTR//intron       24284625//22575960 chr19:3208786-3208787(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208822-3208823(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208860-3208861(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208865-3208866(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208881-3208882(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3208935-3208936(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3209005-3209006(+) m6A 3'UTR//intron       24284625 chr19:3209085-3209086(+) m6A 3'UTR//intron       24284625//25456834 chr19:3209128-3209129(+) m6A 3'UTR//intron       24284625//25456834//22575960 chr19:3209184-3209185(+) m6A 3'UTR//intron       24284625//25456834//22575960 chr19:3209202-3209203(+) Y 3'UTR//intron       26075521 chr19:3209209-3209210(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960 chr19:3209243-3209244(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960 chr19:3209289-3209290(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr19:3209337-3209338(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3209345-3209346(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr19:3209471-3209472(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NCLN	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: NCLN

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg