Basic Information:

  VIRBase ID:  

VHID00121088

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          TMEM8B:  NM_001042590     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	TMEM8B
miRBase Accession/Entrez ID	MIMAT0014693	51754
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C9orf127//FP588//LINC00950//NAG-5//NAG5//NGX6//NGX6a

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM8B	chr9:35814829-35814830(+) m6A 5'UTR       27773536 chr9:35814864-35814865(+) m6A 5'UTR       27773536 chr9:35814994-35814995(+) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536 chr9:35815043-35815044(+) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536 chr9:35815195-35815196(+) m6A 5'UTR       25456834//27773535 chr9:35815284-35815285(+) m6A 5'UTR       25456834//27773535 chr9:35829304-35829305(+) m6A 5'UTR//exon//intron       24981863 chr9:35829346-35829347(+) m6A 5'UTR//intron       24981863 chr9:35829561-35829562(+) m6A 5'UTR//exon//intron       24284625//24209618//24981863 chr9:35829878-35829879(+) m6A 5'UTR//exon//intron       24284625//24981863 chr9:35835162-35835163(+) m6A 5'UTR//exon//intron       24284625 chr9:35842439-35842440(+) m6A CDS//exon//intron       24284625 chr9:35842479-35842480(+) m6A CDS//exon//intron       24284625 chr9:35842495-35842496(+) m6A CDS//exon//intron       24284625 chr9:35853621-35853622(+) m6A CDS       24209618//25456834//24981863 chr9:35853628-35853629(+) m6A CDS       24209618//25456834//24981863 chr9:35853708-35853709(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:35853919-35853920(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:35853939-35853940(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:35853959-35853960(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35853966-35853967(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35853978-35853979(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35853997-35853998(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35854006-35854007(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35854055-35854056(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr9:35854088-35854089(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:35854146-35854147(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:35854168-35854169(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr9:35854227-35854228(+) m6A 3'UTR       24284625//25456834//24981863 chr9:35854346-35854347(+) m6A 3'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM8B	Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: TMEM8B

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg