Basic Information:

  VIRBase ID:  

VHID00120849

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          NELFB:  NM_015456     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	NELFB
miRBase Accession/Entrez ID	MIMAT0014693	25920
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	COBRA1//NELF-B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NELFB	chr9:140164752(+) A-I      intronic chr9:140162940(+) A-I      intronic chr9:140153657(+) A-I      intronic chr9:140153656(+) A-I      intronic chr9:140153184(+) A-I      intronic chr9:140161988(+) A-I      intronic chr9:140163008(+) A-I      intronic chr9:140153633(+) A-I      intronic chr9:140156056(+) A-I      intronic chr9:140155034(+) A-I      intronic chr9:140162988(+) A-I      intronic chr9:140162950(+) A-I      intronic chr9:140162852(+) A-I      intronic chr9:140153625(+) A-I      intronic chr9:140153490(+) A-I      intronic chr9:140153655(+) A-I      intronic chr9:140155999(+) A-I      intronic chr9:140152533(+) A-I      intronic chr9:140152531(+) A-I      intronic chr9:140152518(+) A-I      intronic chr9:140152496(+) A-I      intronic chr9:140152956(+) A-I      intronic chr9:140152854(+) A-I      intronic chr9:140152655(+) A-I      intronic chr9:140152553(+) A-I      intronic chr9:140153552(+) A-I      intronic chr9:140153613(+) A-I      intronic chr9:140155332(+) A-I      intronic chr9:140162944(+) A-I      intronic chr9:140162837(+) A-I      intronic chr9:140154985(+) A-I      intronic chr9:140151914(+) A-I      intronic chr9:140164809(+) A-I      intronic chr9:140162168(+) A-I      intronic chr9:140162126(+) A-I      intronic chr9:140164872(+) A-I      intronic chr9:140153536(+) A-I      intronic chr9:140162045(+) A-I      intronic chr9:140155166(+) A-I      intronic chr9:140153400(+) A-I      intronic chr9:140153169(+) A-I      intronic chr9:140162959(+) A-I      intronic chr9:140162014(+) A-I      intronic chr9:140153546(+) A-I      intronic chr9:140162024(+) A-I      intronic chr9:140162885(+) A-I      intronic chr9:140157198(+) A-I      intronic chr9:140165353(+) A-I      intronic chr9:140155179(+) A-I      intronic chr9:140153146(+) A-I      intronic chr9:140164833(+) A-I      intronic chr9:140152228(+) A-I      intronic chr9:140165226(+) A-I      intronic chr9:140152676(+) A-I      intronic chr9:140152981(+) A-I      intronic chr9:140153501(+) A-I      intronic chr9:140155645(+) A-I      intronic chr9:140152832(+) A-I      intronic chr9:140165321(+) A-I      intronic chr9:140155400(+) A-I      intronic chr9:140162917(+) A-I      intronic chr9:140165253(+) A-I      intronic chr9:140155461(+) A-I      intronic chr9:140164653(+) A-I      intronic chr9:140162085(+) A-I      intronic chr9:140155404(+) A-I      intronic chr9:140162019(+) A-I      intronic chr9:140162882(+) A-I      intronic chr9:140162805(+) A-I      intronic chr9:140162038(+) A-I      intronic chr9:140162990(+) A-I      intronic chr9:140162958(+) A-I      intronic chr9:140161964(+) A-I      intronic chr9:140155390(+) A-I      intronic chr9:140153599(+) A-I      intronic chr9:140162783(+) A-I      intronic chr9:140151892(+) A-I      intronic chr9:140152629(+) A-I      intronic chr9:140165049(+) A-I      intronic chr9:140156060(+) A-I      intronic chr9:140164716(+) A-I      intronic chr9:140153608(+) A-I      intronic chr9:140162774(+) A-I      intronic chr9:140163013(+) A-I      intronic chr9:140162146(+) A-I      intronic chr9:140162206(+) A-I      intronic chr9:140163020(+) A-I      intronic chr9:140162887(+) A-I      intronic chr9:140154641(+) A-I      intronic chr9:140155671(+) A-I      intronic chr9:140164654(+) A-I      intronic chr9:140155044(+) A-I      intronic chr9:140155855(+) A-I      intronic chr9:140155396(+) A-I      intronic chr9:140162075(+) A-I      intronic chr9:140162979(+) A-I      intronic chr9:140162850(+) A-I      intronic chr9:140153042(+) A-I      intronic chr9:140154619(+) A-I      intronic chr9:140153549(+) A-I      intronic chr9:140153030(+) A-I      intronic chr9:140162218(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NELFB	chr9:140149815-140149816(+) m6A 5'UTR       24209618//25456834 chr9:140149980-140149981(+) m6A CDS       24209618 chr9:140150004-140150005(+) m6A CDS       24209618 chr9:140150015-140150016(+) m6A CDS       24209618 chr9:140150410-140150411(+) m6A CDS       24209618 chr9:140150467-140150468(+) m6A CDS       22575960 chr9:140150797-140150798(+) m6A CDS       22575960 chr9:140151289-140151290(+) m6A CDS       24284625//22575960 chr9:140157660-140157661(+) m6A CDS       - chr9:140158739-140158740(+) m6A CDS       24284625 chr9:140160330-140160331(+) m6A CDS       24284625 chr9:140160419-140160420(+) m6A CDS       24284625 chr9:140160840-140160841(+) m6A CDS       24284625 chr9:140166625-140166626(+) m6A CDS       24284625 chr9:140167283-140167284(+) m6A CDS       24284625 chr9:140167391-140167392(+) m6A 3'UTR       24284625//22575960 chr9:140167453-140167454(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr9:140167551-140167552(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:140167656-140167657(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:140167773-140167774(+) m6A 3'UTR       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NELFB	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: NELFB

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg