Basic Information:

  VIRBase ID:  

VHID00120015

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H15:  MIMAT0014693          FSCN1:  NM_003088     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H15	FSCN1
miRBase Accession/Entrez ID	MIMAT0014693	6624
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAN1//HSN//p55//SNL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FSCN1	chr7:5639960(+) A-I      intronic chr7:5636893(+) A-I      intronic chr7:5639294(+) A-I      intronic chr7:5639362(+) A-I      intronic chr7:5639995(+) A-I      intronic chr7:5640963(+) A-I      intronic chr7:5641268(+) A-I      intronic chr7:5641737(+) A-I      intronic chr7:5639862(+) A-I      intronic chr7:5639908(+) A-I      intronic chr7:5639924(+) A-I      intronic chr7:5641321(+) A-I      intronic chr7:5639925(+) A-I      intronic chr7:5639930(+) A-I      intronic chr7:5640328(+) A-I      intronic chr7:5640414(+) A-I      intronic chr7:5640417(+) A-I      intronic chr7:5640424(+) A-I      intronic chr7:5644225(+) A-I      intronic chr7:5640995(+) A-I      intronic chr7:5642452(+) A-I      intronic chr7:5644127(+) A-I      intronic chr7:5642453(+) A-I      intronic chr7:5639990(+) A-I      intronic chr7:5639966(+) A-I      intronic chr7:5641324(+) A-I      intronic chr7:5641213(+) A-I      intronic chr7:5641720(+) A-I      intronic chr7:5640546(+) A-I      intronic chr7:5640240(+) A-I      intronic chr7:5640694(+) A-I      intronic chr7:5636950(+) A-I      intronic chr7:5641243(+) A-I      intronic chr7:5640223(+) A-I      intronic chr7:5639290(+) A-I      intronic chr7:5639965(+) A-I      intronic chr7:5639418(+) A-I      intronic chr7:5642456(+) A-I      intronic chr7:5640472(+) A-I      intronic chr7:5637041(+) A-I      intronic chr7:5641391(+) A-I      intronic chr7:5640898(+) A-I      intronic chr7:5636721(+) A-I      intronic chr7:5640227(+) A-I      intronic chr7:5639938(+) A-I      intronic chr7:5641869(+) A-I      intronic chr7:5641325(+) A-I      intronic chr7:5639188(+) A-I      intronic chr7:5642360(+) A-I      intronic chr7:5639344(+) A-I      intronic chr7:5641420(+) A-I      intronic chr7:5641043(+) A-I      intronic chr7:5640048(+) A-I      intronic chr7:5639898(+) A-I      intronic chr7:5640545(+) A-I      intronic chr7:5640973(+) A-I      intronic chr7:5640308(+) A-I      intronic chr7:5641853(+) A-I      intronic chr7:5641219(+) A-I      intronic chr7:5639861(+) A-I      intronic chr7:5639187(+) A-I      intronic chr7:5639788(+) A-I      intronic chr7:5640622(+) A-I      intronic chr7:5642368(+) A-I      intronic chr7:5640149(+) A-I      intronic chr7:5641319(+) A-I      intronic chr7:5639343(+) A-I      intronic chr7:5641400(+) A-I      intronic chr7:5641267(+) A-I      intronic chr7:5637112(+) A-I      intronic chr7:5639787(+) A-I      intronic chr7:5639781(+) A-I      intronic chr7:5637177(+) A-I      intronic chr7:5641604(+) A-I      intronic chr7:5639209(+) A-I      intronic chr7:5641278(+) A-I      intronic chr7:5636722(+) A-I      intronic chr7:5640226(+) A-I      intronic chr7:5641458(+) A-I      intronic chr7:5639957(+) A-I      intronic chr7:5639250(+) A-I      intronic chr7:5641287(+) A-I      intronic chr7:5640547(+) A-I      intronic chr7:5637281(+) A-I      intronic chr7:5641904(+) A-I      intronic chr7:5640914(+) A-I      intronic chr7:5641019(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FSCN1	chr7:5641350(+) A-I intron -    22327324 chr7:5636721(+) A-G intron -    22484847 chr7:5639187(+) A-G intron -    22484847 chr7:5639250(+) A-G intron -    22484847 chr7:5639300(+) A-G intron -    22484847 chr7:5639781(+) A-G intron -    22484847 chr7:5639788(+) A-G intron -    22484847 chr7:5639861(+) A-G intron -    22484847 chr7:5639938(+) A-G intron -    22484847 chr7:5639970(+) A-G intron -    22484847 chr7:5640192(+) A-G intron -    22484847 chr7:5640226(+) A-G intron -    22484847 chr7:5640227(+) A-G intron -    22484847 chr7:5640240(+) A-G intron -    22484847 chr7:5640262(+) A-G intron -    22484847 chr7:5640308(+) A-G intron -    22484847 chr7:5640586(+) T-C intron -    22484847 chr7:5640622(+) A-G intron -    22484847 chr7:5641043(+) A-G intron -    22484847 chr7:5641287(+) A-G intron -    22484847 chr7:5641324(+) A-G intron -    22484847 chr7:5641349(+) T-C intron -    22484847 chr7:5641350(+) A-G intron -    22484847 chr7:5641386(+) A-G intron -    22484847 chr7:5641391(+) A-G intron -    22484847 chr7:5641396(+) A-G intron -    22484847 chr7:5641400(+) A-G intron -    22484847 chr7:5641458(+) A-G intron -    22484847 chr7:5641869(+) A-G intron -    22484847 chr7:5642569(+) A-G intron -    22484847 chr7:5644511(+) G-A intron -    22484847 chr7:5644665(+) A-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FSCN1	chr7:5632487-5632488(+) m6A 5'UTR       24284625//22575960 chr7:5632515-5632516(+) m6A 5'UTR       24284625//22575960 chr7:5632690-5632691(+) m1A CDS       26863410 chr7:5632784-5632785(+) m6A CDS       24284625//22575960 chr7:5632916-5632917(+) m6A CDS       22575960 chr7:5633063-5633064(+) m6A CDS       22575960 chr7:5633114-5633115(+) m6A CDS       22575960 chr7:5633134-5633135(+) m6A CDS       22575960 chr7:5642838-5642839(+) m6A exon//intron       22575960 chr7:5642893-5642894(+) m6A CDS//exon       24284625//22575960 chr7:5642919-5642920(+) m6A CDS//exon       24284625//22575960 chr7:5642931-5642932(+) m6A CDS//exon       24284625//22575960 chr7:5643241-5643242(+) m6A CDS//exon       24284625//22575960 chr7:5643496-5643497(+) m6A CDS//exon       24284625//22575960 chr7:5644971-5644972(+) m6A CDS//exon       24284625//22575960 chr7:5645072-5645073(+) m6A CDS//exon       24284625//22575960 chr7:5645079-5645080(+) m6A CDS//exon       24284625//22575960 chr7:5645221-5645222(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:5645228-5645229(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:5645268-5645269(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:5645587-5645588(+) m6A 3'UTR//exon       22575960 chr7:5645625-5645626(+) m6A 3'UTR//exon       22575960 chr7:5645663-5645664(+) m6A 3'UTR//exon       22575960 chr7:5645913-5645914(+) Y 3'UTR//exon       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FSCN1	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H15
Interactor2: FSCN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg