Basic Information:

  VIRBase ID:  

VHID00118388

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          COX20:  NM_001312874     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	COX20
miRBase Accession/Entrez ID	MIMAT0014692	116228
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM36A//MC4DN11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COX20	chr1:245008042(+) A-I      3'UTR chr1:245008019(+) A-I      3'UTR chr1:245008017(+) A-I      3'UTR chr1:245008012(+) A-I      3'UTR chr1:245008001(+) A-I      3'UTR chr1:245007975(+) A-I      3'UTR chr1:245007962(+) A-I      3'UTR chr1:245007956(+) A-I      3'UTR chr1:245007913(+) A-I      3'UTR chr1:245007907(+) A-I      3'UTR chr1:245007900(+) A-I      3'UTR chr1:245007861(+) A-I      3'UTR chr1:245007908(+) A-I      3'UTR chr1:245008049(+) A-I      3'UTR chr1:245008011(+) A-I      3'UTR chr1:245008016(+) A-I      3'UTR chr1:245007805(+) A-I      3'UTR chr1:245007949(+) A-I      3'UTR chr1:245007909(+) A-I      3'UTR chr1:245007953(+) A-I      3'UTR chr1:245007798(+) A-I      3'UTR chr1:245008008(+) A-I      3'UTR chr1:245007939(+) A-I      3'UTR chr1:245007945(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COX20	chr1:244998745-244998746(+) m6A 5'UTR       24981863 chr1:244998820-244998821(+) m6A 5'UTR       24209618//25456834//24981863 chr1:244998827-244998828(+) m6A 5'UTR       24209618//25456834//24981863 chr1:244998870-244998871(+) m6A 5'UTR       24209618//25456834 chr1:244998902-244998903(+) m6A 5'UTR       24209618//25456834 chr1:245003073-245003074(+) m6A exon//intron       24981863 chr1:245003971-245003972(+) m6A exon//intron       27773535 chr1:245004021-245004022(+) m6A exon//intron       27773535 chr1:245004190-245004191(+) m6A exon//intron       27773535 chr1:245004221-245004222(+) m6A exon//intron       27773535 chr1:245004233-245004234(+) m6A exon//intron       27773535 chr1:245005343-245005344(+) m6A CDS//exon//intron       24981863//27773535 chr1:245006453-245006454(+) m6A CDS//exon       24981863//27773535 chr1:245006478-245006479(+) m6A 3'UTR//exon       24981863//27773535 chr1:245006531-245006532(+) m6A 3'UTR//exon       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COX20	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: COX20

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg