Basic Information:

  VIRBase ID:  

VHID00118045

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          RPF1:  NM_025065     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	RPF1
miRBase Accession/Entrez ID	MIMAT0014692	80135
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BXDC5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPF1	chr1:84959074(+) A-I      intronic chr1:84959056(+) A-I      intronic chr1:84959110(+) A-I      intronic chr1:84959128(+) A-I      intronic chr1:84952059(+) A-I      intronic chr1:84952021(+) A-I      intronic chr1:84950486(+) A-I      intronic chr1:84950502(+) A-I      intronic chr1:84952113(+) A-I      intronic chr1:84950607(+) A-I      intronic chr1:84952002(+) A-I      intronic chr1:84950578(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPF1	chr1:84944961-84944962(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:84945035-84945036(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:84945139-84945140(+) m6A CDS       24981863//22575960 chr1:84945176-84945177(+) m6A CDS       24981863//27773535 chr1:84946661-84946662(+) m6A CDS       24981863//27773535 chr1:84948621-84948622(+) m6A CDS       24981863//27773535 chr1:84948651-84948652(+) m6A CDS       24981863 chr1:84948661-84948662(+) m6A CDS       24981863 chr1:84961965-84961966(+) m6A CDS       27773535 chr1:84961971-84961972(+) m6A CDS       27773535 chr1:84962011-84962012(+) m6A CDS       27773535 chr1:84963185-84963186(+) m6A 3'UTR       26404942//27773535 chr1:84963200-84963201(+) m6A 3'UTR       26404942//27773535 chr1:84963261-84963262(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPF1	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: RPF1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg