Detail Information

Basic Information:


  VIRBase ID:  

VHID00117493

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:           SLC35F6:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H14-3p SLC35F6
miRBase
Accession/Entrez ID		 MIMAT0014692 54978
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - ANT2BP//C2orf18//TANGO9

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC35F6
chr2:27001935(+) A-I      3'UTR
chr2:27001980(+) A-I      3'UTR
chr2:27002058(+) A-I      3'UTR
chr2:27002087(+) A-I      3'UTR
chr2:27002471(+) A-I      3'UTR
chr2:27002525(+) A-I      3'UTR
chr2:27002790(+) A-I      3'UTR
chr2:27002815(+) A-I      3'UTR
chr2:27002823(+) A-I      3'UTR
chr2:27002872(+) A-I      3'UTR
chr2:27002897(+) A-I      3'UTR
chr2:27002909(+) A-I      3'UTR
chr2:27002914(+) A-I      3'UTR
chr2:27002935(+) A-I      3'UTR
chr2:27002936(+) A-I      3'UTR
chr2:27001902(+) A-I      3'UTR
chr2:27001948(+) A-I      3'UTR
chr2:27001908(+) A-I      3'UTR
chr2:27001909(+) A-I      3'UTR
chr2:27001913(+) A-I      3'UTR
chr2:26996741(+) A-I      intronic
chr2:26996291(+) A-I      intronic
chr2:26996152(+) A-I      intronic
chr2:26991650(+) A-I      intronic
chr2:26991423(+) A-I      intronic
chr2:26991636(+) A-I      intronic
chr2:26991711(+) A-I      intronic
chr2:26991543(+) A-I      intronic
chr2:27002910(+) A-I      3'UTR
chr2:27001997(+) A-I      3'UTR
chr2:27002017(+) A-I      3'UTR
chr2:27002861(+) A-I      3'UTR
chr2:27002949(+) A-I      3'UTR
chr2:27002059(+) A-I      3'UTR
chr2:27002937(+) A-I      3'UTR
chr2:27002071(+) A-I      3'UTR
chr2:27002073(+) A-I      3'UTR
chr2:27002776(+) A-I      3'UTR
chr2:27002802(+) A-I      3'UTR
chr2:27001827(+) A-I      3'UTR
chr2:27002967(+) A-I      3'UTR
chr2:27001829(+) A-I      3'UTR
chr2:27001926(+) A-I      3'UTR
chr2:27002848(+) A-I      3'UTR
chr2:27001938(+) A-I      3'UTR
chr2:27001950(+) A-I      3'UTR
chr2:26996707(+) A-I      intronic
chr2:26993426(+) A-I      intronic
chr2:26996681(+) A-I      intronic
chr2:26996664(+) A-I      intronic
chr2:26991581(+) A-I      intronic
chr2:26996095(+) A-I      intronic
chr2:27002513(+) A-I      3'UTR
chr2:27001825(+) A-I      3'UTR
chr2:27002716(+) A-I      3'UTR
chr2:27001994(+) A-I      3'UTR
chr2:27002523(+) A-I      3'UTR
chr2:27002927(+) A-I      3'UTR
chr2:27001886(+) A-I      3'UTR
chr2:27002490(+) A-I      3'UTR
chr2:27002807(+) A-I      3'UTR
chr2:27002806(+) A-I      3'UTR
chr2:26996119(+) A-I      intronic
chr2:26991801(+) A-I      intronic
chr2:26993093(+) A-I      intronic
chr2:26993424(+) A-I      intronic
chr2:26990623(+) A-I      intronic
chr2:26996250(+) A-I      intronic
chr2:26996581(+) A-I      intronic
chr2:26991369(+) A-I      intronic
chr2:26991637(+) A-I      intronic
chr2:26991371(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC35F6
chr2:26987160-26987161(+) m6A 5'UTR//exon       24284625//24981863
chr2:26987199-26987200(+) m6A 5'UTR//exon       24284625//24981863
chr2:26987226-26987227(+) m6A CDS//exon       24284625//24981863
chr2:26997126-26997127(+) m6A CDS//intron       24284625//24981863
chr2:26997990-26997991(+) m6A CDS//intron       24284625
chr2:26998002-26998003(+) m6A 3'UTR//CDS//intron       24284625
chr2:26998064-26998065(+) m6A 3'UTR//CDS//intron       24284625
chr2:26998337-26998338(+) m6A 3'UTR//CDS//exon       24284625
chr2:27000984-27000985(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960//22608085
chr2:27000995-27000996(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960//22608085
chr2:27001120-27001121(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr2:27001149-27001150(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr2:27001336-27001337(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr2:27001427-27001428(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr2:27001499-27001500(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr2:27001611-27001612(+) m6A 3'UTR       24284625//24209618
chr2:27001626-27001627(+) m6A 3'UTR       24284625//24209618
chr2:27001703-27001704(+) m6A 3'UTR       -
chr2:27003406-27003407(+) m6A 3'UTR       26404942
chr2:27003493-27003494(+) m6A 3'UTR       24284625//24981863
chr2:27003622-27003623(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:27003632-27003633(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:27003667-27003668(+) m6A 3'UTR       24284625//24981863
chr2:27003687-27003688(+) m6A 3'UTR       24284625
chr2:27003716-27003717(+) m6A 3'UTR       24284625
chr2:27003909-27003910(+) m6A 3'UTR       24981863//27773535//22608085
chr2:27003929-27003930(+) m6A 3'UTR       24981863//27773535//22608085
chr2:27003950-27003951(+) m6A 3'UTR       24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC35F6
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H14-3p
Interactor2: SLC35F6

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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