Basic Information:

  VIRBase ID:  

VHID00117387

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          GET4:  NM_015949     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	GET4
miRBase Accession/Entrez ID	MIMAT0014692	51608
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C7orf20//CEE//CGI-20//TRC35

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GET4	chr7:919857(+) A-I      intronic chr7:919780(+) A-I      intronic chr7:919821(+) A-I      intronic chr7:919823(+) A-I      intronic chr7:920741(+) A-I      intronic chr7:919863(+) A-I      intronic chr7:919872(+) A-I      intronic chr7:920699(+) A-I      intronic chr7:919820(+) A-I      intronic chr7:920576(+) A-I      intronic chr7:919818(+) A-I      intronic chr7:920773(+) A-I      intronic chr7:919814(+) A-I      intronic chr7:920667(+) A-I      intronic chr7:920619(+) A-I      intronic chr7:919778(+) A-I      intronic chr7:924536(+) A-I      5'UTR chr7:920764(+) A-I      intronic chr7:920605(+) A-I      intronic chr7:918367(+) A-I      intronic chr7:919923(+) A-I      intronic chr7:919903(+) A-I      intronic chr7:918357(+) A-I      intronic chr7:919933(+) A-I      intronic chr7:919831(+) A-I      intronic chr7:919783(+) A-I      intronic chr7:919730(+) A-I      intronic chr7:920736(+) A-I      intronic chr7:918296(+) A-I      intronic chr7:919723(+) A-I      intronic chr7:924688(+) A-I      5'UTR chr7:924531(+) A-I      5'UTR chr7:924602(+) A-I      5'UTR chr7:924633(+) A-I      5'UTR chr7:924519(+) A-I      5'UTR chr7:924608(+) A-I      5'UTR chr7:924693(+) A-I      5'UTR chr7:924653(+) A-I      5'UTR chr7:924654(+) A-I      5'UTR chr7:924680(+) A-I      5'UTR chr7:924558(+) A-I      5'UTR chr7:924671(+) A-I      5'UTR chr7:924518(+) A-I      5'UTR chr7:924522(+) A-I      5'UTR chr7:920525(+) A-I      intronic chr7:920776(+) A-I      intronic chr7:919899(+) A-I      intronic chr7:920654(+) A-I      intronic chr7:920641(+) A-I      intronic chr7:918259(+) A-I      intronic chr7:920731(+) A-I      intronic chr7:920676(+) A-I      intronic chr7:918272(+) A-I      intronic chr7:919928(+) A-I      intronic chr7:919777(+) A-I      intronic chr7:920754(+) A-I      intronic chr7:920601(+) A-I      intronic chr7:919817(+) A-I      intronic chr7:920763(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GET4	chr7:924522(+) A-I intron -    22327324 chr7:924602(+) A-I intron -    22327324 chr7:917135(+) A-T intron -    22484847 chr7:918272(+) A-G intron -    22484847 chr7:918343(+) G-A intron -    22484847 chr7:918357(+) A-G intron -    22484847 chr7:918379(+) G-A intron -    22484847 chr7:919723(+) A-G intron -    22484847 chr7:919724(+) A-G intron -    22484847 chr7:919744(+) C-T intron -    22484847 chr7:919764(+) A-G intron -    22484847 chr7:919777(+) A-G intron -    22484847 chr7:919783(+) A-G intron -    22484847 chr7:919817(+) A-G intron -    22484847 chr7:919822(+) T-C intron -    22484847 chr7:919831(+) A-G intron -    22484847 chr7:919899(+) A-G intron -    22484847 chr7:919903(+) A-G intron -    22484847 chr7:919923(+) A-G intron -    22484847 chr7:919928(+) A-G intron -    22484847 chr7:919933(+) A-G intron -    22484847 chr7:920547(+) A-G intron -    22484847 chr7:920571(+) A-G intron -    22484847 chr7:920601(+) A-G intron -    22484847 chr7:920605(+) A-G intron -    22484847 chr7:920641(+) A-G intron -    22484847 chr7:920643(+) A-G intron -    22484847 chr7:920676(+) A-G intron -    22484847 chr7:920711(+) A-G intron -    22484847 chr7:920724(+) A-G intron -    22484847 chr7:920736(+) A-G intron -    22484847 chr7:920754(+) A-G intron -    22484847 chr7:920763(+) A-G intron -    22484847 chr7:920764(+) A-G intron -    22484847 chr7:920776(+) A-G intron -    22484847 chr7:924519(+) A-G intron -    22484847 chr7:924522(+) A-G intron -    22484847 chr7:924531(+) A-G intron -    22484847 chr7:924560(+) A-G intron -    22484847 chr7:924602(+) A-G intron -    22484847 chr7:924633(+) A-G intron -    22484847 chr7:924639(+) A-G intron -    22484847 chr7:924671(+) A-G intron -    22484847 chr7:924680(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GET4	chr7:916423-916424(+) m6A CDS       24284625//24209618 chr7:917756-917757(+) m6A 5'UTR//intron       - chr7:917849-917850(+) m6A 5'UTR//intron       25456834 chr7:917905-917906(+) m6A 5'UTR//intron       - chr7:925169-925170(+) m6A 5'UTR//intron       - chr7:926744-926745(+) m6A CDS//intron       27371828 chr7:933435-933436(+) m6A CDS//exon       24284625 chr7:933552-933553(+) m6A CDS//exon       24284625 chr7:934973-934974(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr7:935054-935055(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr7:935059-935060(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:935079-935080(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:935246-935247(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:935475-935476(+) m6A 3'UTR       24284625//25456834//24981863 chr7:935531-935532(+) m6A 3'UTR       24284625//25456834//24981863 chr7:935559-935560(+) m6A 3'UTR       24284625//25456834 chr7:935757-935758(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GET4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: GET4

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg