Basic Information:

  VIRBase ID:  

VHID00117326

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          MRPL4:  NM_015956     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	MRPL4
miRBase Accession/Entrez ID	MIMAT0014692	51073
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CGI-28//L4mt

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MRPL4	chr19:10363986(+) A-I      intronic chr19:10363989(+) A-I      intronic chr19:10363993(+) A-I      intronic chr19:10364034(+) A-I      intronic chr19:10366644(+) A-I      intronic chr19:10366646(+) A-I      intronic chr19:10364360(+) A-I      intronic chr19:10366566(+) A-I      intronic chr19:10364973(+) A-I      intronic chr19:10367018(+) A-I      intronic chr19:10365580(+) A-I      intronic chr19:10364228(+) A-I      intronic chr19:10364339(+) A-I      intronic chr19:10367002(+) A-I      intronic chr19:10364764(+) A-I      intronic chr19:10364751(+) A-I      intronic chr19:10364316(+) A-I      intronic chr19:10365620(+) A-I      intronic chr19:10363903(+) A-I      intronic chr19:10366702(+) A-I      intronic chr19:10364320(+) A-I      intronic chr19:10368547(+) A-I      intronic chr19:10365677(+) A-I      intronic chr19:10365916(+) A-I      intronic chr19:10364828(+) A-I      intronic chr19:10365885(+) A-I      intronic chr19:10364254(+) A-I      intronic chr19:10366841(+) A-I      intronic chr19:10364352(+) A-I      intronic chr19:10365581(+) A-I      intronic chr19:10366631(+) A-I      intronic chr19:10367056(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MRPL4	chr19:10364425(+) A-I intron -    22327324 chr19:10363903(+) A-G intron -    22484847 chr19:10364425(+) A-G intron -    22484847 chr19:10364828(+) A-G intron -    22484847 chr19:10365885(+) A-G intron -    22484847 chr19:10369773(+) T-A intron -    22484847 chr19:10369774(+) C-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MRPL4	chr19:10362638-10362639(+) m6A 5'UTR       24981863 chr19:10362782-10362783(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr19:10363115-10363116(+) m6A CDS//exon       24209618 chr19:10363400-10363401(+) m6A exon//intron       - chr19:10365269-10365270(+) m6A CDS//exon       - chr19:10365302-10365303(+) m6A CDS//exon       - chr19:10369107-10369108(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369131-10369132(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369176-10369177(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369194-10369195(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369285-10369286(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369336-10369337(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10369426-10369427(+) Y 3'UTR//intron       26075521 chr19:10369745-10369746(+) m6A 3'UTR//intron       24284625//24981863 chr19:10369763-10369764(+) m6A 3'UTR//intron       24284625//24981863 chr19:10370058-10370059(+) m6A CDS//intron       24284625 chr19:10370214-10370215(+) m6A 3'UTR//intron       - chr19:10370364-10370365(+) m6A 3'UTR//CDS       24284625//24981863//22575960//22608085 chr19:10370382-10370383(+) m6A 3'UTR//CDS       24284625//24981863//22575960//22608085 chr19:10370395-10370396(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr19:10370579-10370580(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MRPL4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: MRPL4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg