Basic Information:

  VIRBase ID:  

VHID00116167

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          PTBP1:  NM_002819     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	PTBP1
miRBase Accession/Entrez ID	MIMAT0014692	5725
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HNRNP-I//HNRNPI//HNRPI//pPTB//PTB//PTB-1//PTB-T//PTB2//PTB3//PTB4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PTBP1	chr19:810227(+) A-I      intronic chr19:810146(+) A-I      intronic chr19:810130(+) A-I      intronic chr19:810082(+) A-I      intronic chr19:809688(+) A-I      intronic chr19:810078(+) A-I      intronic chr19:809582(+) A-I      intronic chr19:809563(+) A-I      intronic chr19:809434(+) A-I      intronic chr19:809183(+) A-I      intronic chr19:809166(+) A-I      intronic chr19:809062(+) A-I      intronic chr19:809211(+) A-I      intronic chr19:809206(+) A-I      intronic chr19:810148(+) A-I      intronic chr19:809705(+) A-I      intronic chr19:809109(+) A-I      intronic chr19:810149(+) A-I      intronic chr19:809121(+) A-I      intronic chr19:810142(+) A-I      intronic chr19:809267(+) A-I      intronic chr19:809508(+) A-I      intronic chr19:810261(+) A-I      intronic chr19:809034(+) A-I      intronic chr19:809033(+) A-I      intronic chr19:809593(+) A-I      intronic chr19:810168(+) A-I      intronic chr19:809751(+) A-I      intronic chr19:809826(+) A-I      intronic chr19:809534(+) A-I      intronic chr19:809462(+) A-I      intronic chr19:810147(+) A-I      intronic chr19:809645(+) A-I      intronic chr19:810112(+) A-I      intronic chr19:810057(+) A-I      intronic chr19:810213(+) A-I      intronic chr19:809089(+) A-I      intronic chr19:809681(+) A-I      intronic chr19:809113(+) A-I      intronic chr19:810065(+) A-I      intronic chr19:809175(+) A-I      intronic chr19:810131(+) A-I      intronic chr19:809126(+) A-I      intronic chr19:809268(+) A-I      intronic chr19:810228(+) A-I      intronic chr19:809734(+) A-I      intronic chr19:810105(+) A-I      intronic chr19:810152(+) A-I      intronic chr19:810145(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PTBP1	chr19:798521-798522(+) m6A 5'UTR//intron       24284625//24981863//22575960//22608085 chr19:803601-803602(+) m6A 5'UTR//CDS//exon//intron       24284625//24981863 chr19:804203-804204(+) m6A CDS//exon//intron       24284625//22575960 chr19:804307-804308(+) m6A CDS//exon//intron       24284625//22575960 chr19:804337-804338(+) m6A CDS//exon//intron       24284625//22575960 chr19:804414-804415(+) m6A CDS//exon//intron       24284625//22575960 chr19:804457-804458(+) m6A CDS//exon//intron       22575960 chr19:804474-804475(+) m6A CDS//exon//intron       22575960 chr19:804508-804509(+) m6A CDS//exon//intron       22575960//22608085 chr19:804559-804560(+) m6A CDS//exon//intron       22575960//22608085 chr19:804577-804578(+) m6A CDS//exon//intron       22575960//22608085 chr19:804664-804665(+) m6A CDS//exon//intron       22575960 chr19:804877-804878(+) m6A CDS//exon//intron       22575960 chr19:804910-804911(+) m6A CDS//exon//intron       22575960 chr19:805028-805029(+) m6A CDS//exon//intron       22575960 chr19:805130-805131(+) m6A CDS//exon//intron       24284625//26404942//22575960 chr19:805145-805146(+) m6A CDS//exon//intron       24284625//26404942//22575960 chr19:805163-805164(+) m6A CDS//exon//intron       24284625//26404942//22575960 chr19:805168-805169(+) m6A CDS//exon//intron       24284625//26404942//22575960 chr19:805660-805661(+) m6A exon//intron       24284625 chr19:806886-806887(+) m6A exon//intron       - chr19:807644-807645(+) m6A exon//intron       24284625//24981863 chr19:807649-807650(+) m6A exon//intron       24284625//24981863 chr19:807655-807656(+) m6A exon//intron       24284625//24981863 chr19:807661-807662(+) m6A exon//intron       24284625//24981863 chr19:807672-807673(+) m6A exon//intron       24284625//24981863 chr19:807690-807691(+) m6A exon//intron       24284625//24981863 chr19:807706-807707(+) m6A exon//intron       24284625//24981863 chr19:807775-807776(+) m6A exon//intron       24284625//24981863 chr19:808330-808331(+) m6A exon//intron       - chr19:808644-808645(+) m6A 3'UTR//CDS//exon//intron       22575960 chr19:808662-808663(+) m6A 3'UTR//CDS//exon       22575960 chr19:808710-808711(+) m6A 3'UTR//CDS//exon       22575960 chr19:808719-808720(+) m6A 3'UTR//CDS//exon       22575960 chr19:810698-810699(+) m6A 3'UTR//CDS//exon       22575960 chr19:810785-810786(+) m6A 3'UTR//CDS//exon       24284625//27773535//22575960 chr19:810896-810897(+) m6A 3'UTR//exon       24284625//27773535//22575960//22608085 chr19:810918-810919(+) m6A 3'UTR//exon       24284625//27773535//22575960//22608085 chr19:811010-811011(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22575960//22608085 chr19:811072-811073(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr19:811166-811167(+) m6A 3'UTR//exon       24284625//22575960 chr19:811210-811211(+) m6A 3'UTR//exon       24284625//22575960 chr19:811814-811815(+) m6A 3'UTR       22575960 chr19:811826-811827(+) m6A 3'UTR       22575960 chr19:811858-811859(+) m6A 3'UTR       22575960 chr19:811901-811902(+) m6A 3'UTR       22575960 chr19:812145-812146(+) m6A 3'UTR       27773535//22575960 chr19:812195-812196(+) m6A 3'UTR       24284625//27773535//22575960 chr19:812205-812206(+) m6A 3'UTR       24284625//27773535//22575960 chr19:812217-812218(+) m6A 3'UTR       24284625//24981863//27773535//22575960 chr19:812286-812287(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PTBP1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: PTBP1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg