Basic Information:

  VIRBase ID:  

VHID00115694

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-3p:  MIMAT0014692          PHC2:  NM_001385122     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-3p	PHC2
miRBase Accession/Entrez ID	MIMAT0014692	1912
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EDR2//HPH2//PH2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHC2	chr1:33813297(-) A-I      intronic chr1:33813967(-) A-I      intronic chr1:33801686(-) A-I      intronic chr1:33801763(-) A-I      intronic chr1:33801662(-) A-I      intronic chr1:33801338(-) A-I      intronic chr1:33801373(-) A-I      intronic chr1:33801379(-) A-I      intronic chr1:33801401(-) A-I      intronic chr1:33801419(-) A-I      intronic chr1:33801439(-) A-I      intronic chr1:33801456(-) A-I      intronic chr1:33801657(-) A-I      intronic chr1:33801722(-) A-I      intronic chr1:33801727(-) A-I      intronic chr1:33808989(-) A-I      intronic chr1:33808882(-) A-I      intronic chr1:33801846(-) A-I      intronic chr1:33801793(-) A-I      intronic chr1:33801783(-) A-I      intronic chr1:33794090(-) A-I      intronic chr1:33801760(-) A-I      intronic chr1:33801418(-) A-I      intronic chr1:33792396(-) A-I      intronic chr1:33810303(-) A-I      intronic chr1:33801495(-) A-I      intronic chr1:33801258(-) A-I      intronic chr1:33801728(-) A-I      intronic chr1:33801675(-) A-I      intronic chr1:33801432(-) A-I      intronic chr1:33801259(-) A-I      intronic chr1:33801862(-) A-I      intronic chr1:33801389(-) A-I      intronic chr1:33801758(-) A-I      intronic chr1:33801333(-) A-I      intronic chr1:33794096(-) A-I      intronic chr1:33792434(-) A-I      intronic chr1:33810351(-) A-I      intronic chr1:33801309(-) A-I      intronic chr1:33808971(-) A-I      intronic chr1:33801335(-) A-I      intronic chr1:33801679(-) A-I      intronic chr1:33801650(-) A-I      intronic chr1:33792351(-) A-I      intronic chr1:33810409(-) A-I      intronic chr1:33801738(-) A-I      intronic chr1:33801754(-) A-I      intronic chr1:33801836(-) A-I      intronic chr1:33801767(-) A-I      intronic chr1:33794060(-) A-I      intronic chr1:33794092(-) A-I      intronic chr1:33801714(-) A-I      intronic chr1:33801854(-) A-I      intronic chr1:33801784(-) A-I      intronic chr1:33810329(-) A-I      intronic chr1:33809433(-) A-I      intronic chr1:33801415(-) A-I      intronic chr1:33801296(-) A-I      intronic chr1:33801857(-) A-I      intronic chr1:33801344(-) A-I      intronic chr1:33808962(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PHC2	chr1:33801495(-) A-G intron -    22484847 chr1:33801650(-) A-G intron -    22484847 chr1:33801714(-) A-G intron -    22484847 chr1:33801738(-) A-G intron -    22484847 chr1:33801758(-) A-G intron -    22484847 chr1:33808962(-) A-G intron -    22484847 chr1:33808971(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHC2	chr1:33789274-33789275(-) m6A 3'UTR//exon       27773535 chr1:33789505-33789506(-) m6A 3'UTR//exon       24284625 chr1:33789522-33789523(-) m6A 3'UTR//exon       - chr1:33789680-33789681(-) m6A 3'UTR//exon       27773535 chr1:33789777-33789778(-) m6A 3'UTR//exon       27773535 chr1:33789802-33789803(-) m6A 3'UTR//exon       27773535 chr1:33789856-33789857(-) m6A 3'UTR//exon       27773535 chr1:33790406-33790407(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:33790472-33790473(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:33790526-33790527(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:33790547-33790548(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr1:33794543-33794544(-) m6A CDS//exon       27773535 chr1:33794559-33794560(-) m6A CDS//exon       27773535 chr1:33794589-33794590(-) m6A CDS//exon       27773535 chr1:33794648-33794649(-) m6A CDS//exon       27773535 chr1:33794685-33794686(-) m6A CDS//exon       27773535 chr1:33795768-33795769(-) m6A CDS//exon       27773535 chr1:33795782-33795783(-) m6A CDS//exon       27773535 chr1:33797936-33797937(-) m6A CDS//exon       27773535 chr1:33799449-33799450(-) m6A exon//intron       27773535 chr1:33799476-33799477(-) m6A exon//intron       27773535 chr1:33799753-33799754(-) m6A CDS//exon//intron       - chr1:33799774-33799775(-) m6A CDS//exon//intron       - chr1:33799823-33799824(-) m6A CDS//exon       - chr1:33799890-33799891(-) m6A 5'UTR//CDS//exon       24209618 chr1:33800831-33800832(-) m6A exon//intron       24209618 chr1:33800839-33800840(-) m6A exon//intron       24209618 chr1:33815200-33815201(-) m6A 5'UTR//exon//intron       24209618 chr1:33815271-33815272(-) m6A 5'UTR//exon//intron       24209618 chr1:33818863-33818864(-) m6A exon//intron       27773535 chr1:33818874-33818875(-) m6A exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PHC2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-3p
Interactor2: PHC2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg