Detail Information

Basic Information:


  VIRBase ID:  

VHID00115024

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-5p:           C15orf40:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H14-5p C15orf40
miRBase
Accession/Entrez ID		 MIMAT0014691 123207
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C15orf40
chr15:83672673(-) A-I      intronic
chr15:83672703(-) A-I      intronic
chr15:83672695(-) A-I      intronic
chr15:83672693(-) A-I      intronic
chr15:83660856(-) A-I      intronic
chr15:83672677(-) A-I      intronic
chr15:83660846(-) A-I      intronic
chr15:83660836(-) A-I      intronic
chr15:83668550(-) A-I      intronic
chr15:83660852(-) A-I      intronic
chr15:83660824(-) A-I      intronic
chr15:83672664(-) A-I      intronic
chr15:83672667(-) A-I      intronic
chr15:83672668(-) A-I      intronic
chr15:83665541(-) A-I      intronic
chr15:83672669(-) A-I      intronic
chr15:83672732(-) A-I      intronic
chr15:83668143(-) A-I      intronic
chr15:83672718(-) A-I      intronic
chr15:83668186(-) A-I      intronic
chr15:83672688(-) A-I      intronic
chr15:83672656(-) A-I      intronic
chr15:83672704(-) A-I      intronic
chr15:83672675(-) A-I      intronic
chr15:83669633(-) A-I      intronic
chr15:83665148(-) A-I      intronic
chr15:83672592(-) A-I      intronic
chr15:83672576(-) A-I      intronic
chr15:83672130(-) A-I      intronic
chr15:83672125(-) A-I      intronic
chr15:83672061(-) A-I      intronic
chr15:83670928(-) A-I      intronic
chr15:83672767(-) A-I      intronic
chr15:83670829(-) A-I      intronic
chr15:83670693(-) A-I      intronic
chr15:83670788(-) A-I      intronic
chr15:83665707(-) A-I      intronic
chr15:83670840(-) A-I      intronic
chr15:83675320(-) A-I      intronic
chr15:83672773(-) A-I      intronic
chr15:83672756(-) A-I      intronic
chr15:83672660(-) A-I      intronic
chr15:83672058(-) A-I      intronic
chr15:83672052(-) A-I      intronic
chr15:83671675(-) A-I      intronic
chr15:83665694(-) A-I      intronic
chr15:83665661(-) A-I      intronic
chr15:83670830(-) A-I      intronic
chr15:83665203(-) A-I      intronic
chr15:83674215(-) A-I      3'UTR
chr15:83674273(-) A-I      3'UTR
chr15:83674148(-) A-I      3'UTR
chr15:83674211(-) A-I      3'UTR
chr15:83674175(-) A-I      3'UTR
chr15:83674169(-) A-I      3'UTR
chr15:83674139(-) A-I      3'UTR
chr15:83665763(-) A-I      intronic
chr15:83670720(-) A-I      intronic
chr15:83671743(-) A-I      intronic
chr15:83668221(-) A-I      intronic
chr15:83668220(-) A-I      intronic
chr15:83669837(-) A-I      intronic
chr15:83672678(-) A-I      intronic
chr15:83661146(-) A-I      intronic
chr15:83670880(-) A-I      intronic
chr15:83668109(-) A-I      intronic
chr15:83671566(-) A-I      intronic
chr15:83672597(-) A-I      intronic
chr15:83671808(-) A-I      intronic
chr15:83672699(-) A-I      intronic
chr15:83668175(-) A-I      intronic
chr15:83672016(-) A-I      intronic
chr15:83665136(-) A-I      intronic
chr15:83669783(-) A-I      intronic
chr15:83672941(-) A-I      intronic
chr15:83661199(-) A-I      intronic
chr15:83674084(-) A-I      3'UTR
chr15:83674325(-) A-I      3'UTR
chr15:83677114(-) A-I      3'UTR
chr15:83677008(-) A-I      3'UTR
chr15:83677053(-) A-I      3'UTR
chr15:83674243(-) A-I      3'UTR
chr15:83660750(-) A-I      NonSyn:Ser->Gly
chr15:83677184(-) A-I      NonSyn:Tyr->Cys
chr15:83660776(-) A-I      NonSyn:Gln->Arg
chr15:83660935(-) A-I      intronic
chr15:83670774(-) A-I      intronic
chr15:83670888(-) A-I      intronic
chr15:83669715(-) A-I      intronic
chr15:83675471(-) A-I      intronic
chr15:83674861(-) A-I      intronic
chr15:83669778(-) A-I      intronic
chr15:83673000(-) A-I      intronic
chr15:83675369(-) A-I      intronic
chr15:83665723(-) A-I      intronic
chr15:83665514(-) A-I      intronic
chr15:83665658(-) A-I      intronic
chr15:83665228(-) A-I      intronic
chr15:83668077(-) A-I      intronic
chr15:83675422(-) A-I      intronic
chr15:83664415(-) A-I      intronic
chr15:83672080(-) A-I      intronic
chr15:83665501(-) A-I      intronic
chr15:83671641(-) A-I      intronic
chr15:83668215(-) A-I      intronic
chr15:83672534(-) A-I      intronic
chr15:83672974(-) A-I      intronic
chr15:83675461(-) A-I      intronic
chr15:83675327(-) A-I      intronic
chr15:83671696(-) A-I      intronic
chr15:83672015(-) A-I      intronic
chr15:83675340(-) A-I      intronic
chr15:83670736(-) A-I      intronic
chr15:83671692(-) A-I      intronic
chr15:83675404(-) A-I      intronic
chr15:83665332(-) A-I      intronic
chr15:83668161(-) A-I      intronic
chr15:83669832(-) A-I      intronic
chr15:83672158(-) A-I      intronic
chr15:83670742(-) A-I      intronic
chr15:83670757(-) A-I      intronic
chr15:83674896(-) A-I      intronic
chr15:83674727(-) A-I      intronic
chr15:83668101(-) A-I      intronic
chr15:83668083(-) A-I      intronic
chr15:83674777(-) A-I      intronic
chr15:83668194(-) A-I      intronic
chr15:83672006(-) A-I      intronic
chr15:83670912(-) A-I      intronic
chr15:83672528(-) A-I      intronic
chr15:83660295(-) A-I      intronic
chr15:83675261(-) A-I      intronic
chr15:83672042(-) A-I      intronic
chr15:83671999(-) A-I      intronic
chr15:83672727(-) A-I      intronic
chr15:83670797(-) A-I      intronic
chr15:83674718(-) A-I      intronic
chr15:83672638(-) A-I      intronic
chr15:83675346(-) A-I      intronic
chr15:83670843(-) A-I      intronic
chr15:83671835(-) A-I      intronic
chr15:83669703(-) A-I      intronic
chr15:83661104(-) A-I      intronic
chr15:83664371(-) A-I      intronic
chr15:83672146(-) A-I      intronic
chr15:83669758(-) A-I      intronic
chr15:83670874(-) A-I      intronic
chr15:83676386(-) A-I      intronic
chr15:83675392(-) A-I      intronic
chr15:83675421(-) A-I      intronic
chr15:83671834(-) A-I      intronic
chr15:83674739(-) A-I      intronic
chr15:83668203(-) A-I      intronic
chr15:83670123(-) A-I      intronic
chr15:83665799(-) A-I      intronic
chr15:83675487(-) A-I      intronic
chr15:83665648(-) A-I      intronic
chr15:83672676(-) A-I      intronic
chr15:83671718(-) A-I      intronic
chr15:83665662(-) A-I      intronic
chr15:83662463(-) A-I      intronic
chr15:83671623(-) A-I      intronic
chr15:83672086(-) A-I      intronic
chr15:83669747(-) A-I      intronic
chr15:83661083(-) A-I      intronic
chr15:83670792(-) A-I      intronic
chr15:83664374(-) A-I      intronic
chr15:83665145(-) A-I      intronic
chr15:83674975(-) A-I      intronic
chr15:83675472(-) A-I      intronic
chr15:83671606(-) A-I      intronic
chr15:83670824(-) A-I      intronic
chr15:83665283(-) A-I      intronic
chr15:83672165(-) A-I      intronic
chr15:83671701(-) A-I      intronic
chr15:83674109(-) A-I      3'UTR
chr15:83674309(-) A-I      3'UTR
chr15:83674161(-) A-I      3'UTR
chr15:83674249(-) A-I      3'UTR
chr15:83674201(-) A-I      3'UTR
chr15:83674110(-) A-I      3'UTR
chr15:83674237(-) A-I      3'UTR
chr15:83674224(-) A-I      3'UTR
chr15:83674308(-) A-I      3'UTR
chr15:83674174(-) A-I      3'UTR
chr15:83674158(-) A-I      3'UTR
chr15:83674152(-) A-I      3'UTR
chr15:83674165(-) A-I      3'UTR
chr15:83674239(-) A-I      3'UTR
chr15:83674263(-) A-I      3'UTR
chr15:83674230(-) A-I      3'UTR
chr15:83674183(-) A-I      3'UTR
chr15:83674303(-) A-I      3'UTR
chr15:83674104(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C15orf40
chr15:83670880(-) A-I intron -    15258596
chr15:83670912(-) A-I intron -    15258596
chr15:83671566(-) A-I intron -    15258596
chr15:83671641(-) A-I intron -    15258596
chr15:83672165(-) A-I intron -    15258596
chr15:83674084(-) A-I exon 3'UTR    15258596
chr15:83674109(-) A-I exon 3'UTR    15258596
chr15:83674110(-) A-I exon 3'UTR    15258596   //22327324
chr15:83674152(-) A-I exon 3'UTR    15258596
chr15:83674161(-) A-I exon 3'UTR    15258596   //22327324
chr15:83674165(-) A-I exon 3'UTR    15258596
chr15:83674174(-) A-I exon 3'UTR    15258596
chr15:83674201(-) A-I exon 3'UTR    15258596
chr15:83674224(-) A-I exon 3'UTR    15258596
chr15:83674229(-) A-I exon 3'UTR    15258596
chr15:83674230(-) A-I exon 3'UTR    15258596
chr15:83674237(-) A-I exon 3'UTR    15258596
chr15:83674239(-) A-I exon 3'UTR    15258596
chr15:83674263(-) A-I exon 3'UTR    15258596
chr15:83674303(-) A-I exon 3'UTR    15258596
chr15:83670792(-) A-I intron -    22327324
chr15:83675472(-) A-I intron -    22327324
chr15:83668161(-) A-I intron -    21960545
chr15:83674273(-) A-I exon 3'UTR    21960545
chr15:83674325(-) A-I exon 3'UTR    21960545
chr15:83674161(-) A-G exon 3'UTR    21725310   //22484847
chr15:83668161(-) A-G intron -    22484847
chr15:83670720(-) A-G intron -    22484847
chr15:83670742(-) A-G intron -    22484847
chr15:83670792(-) A-G intron -    22484847
chr15:83671835(-) A-G intron -    22484847
chr15:83672080(-) A-G intron -    22484847
chr15:83674066(-) G-C exon 3'UTR    22484847
chr15:83674110(-) A-G exon 3'UTR    22484847
chr15:83674152(-) A-G exon 3'UTR    22484847
chr15:83674165(-) A-G exon 3'UTR    22484847
chr15:83674174(-) A-G exon 3'UTR    22484847
chr15:83674201(-) A-G exon 3'UTR    22484847
chr15:83674237(-) A-G exon 3'UTR    22484847
chr15:83674325(-) A-G exon 3'UTR    22484847
chr15:83674777(-) A-G intron -    22484847
chr15:83675471(-) A-G intron -    22484847
chr15:83675472(-) A-G intron -    22484847
chr15:83675487(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C15orf40
chr15:83659377-83659378(-) m6A 3'UTR//intron       24981863
chr15:83673465-83673466(-) m6A 3'UTR//intron       27773535
chr15:83673552-83673553(-) m6A 3'UTR//intron       27773535//22608085
chr15:83673661-83673662(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673675-83673676(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673713-83673714(-) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673838-83673839(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673848-83673849(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673855-83673856(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673914-83673915(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673943-83673944(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83673952-83673953(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085
chr15:83674015-83674016(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr15:83674062-83674063(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr15:83674132-83674133(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr15:83674228-83674229(-) m6A 3'UTR//exon//intron       24981863//22608085
chr15:83674251-83674252(-) m6A 3'UTR//exon//intron       24981863//22608085
chr15:83674353-83674354(-) m6A CDS//exon//intron       24981863//27773535
chr15:83679085-83679086(-) m6A CDS//exon//intron       24284625//27371828
chr15:83679094-83679095(-) m6A CDS//exon//intron       24284625//27371828
chr15:83679624-83679625(-) m6A exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C15orf40
Exosome Blood     -
Nucleolus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H14-5p
Interactor2: C15orf40

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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