Detail Information

Basic Information:


  VIRBase ID:  

VHID00114966

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-5p:           ORMDL3:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H14-5p ORMDL3
miRBase
Accession/Entrez ID		 MIMAT0014691 94103
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ORMDL3
chr17:38078771(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ORMDL3
chr17:38078771(-) A-I exon 3'UTR    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ORMDL3
chr17:38077396-38077397(-) m6A 3'UTR//exon       27773535
chr17:38077530-38077531(-) m6A 3'UTR//exon       27773535
chr17:38077888-38077889(-) m6A 3'UTR//intron       27773535
chr17:38078016-38078017(-) m6A 3'UTR       24981863//28052920//27773535
chr17:38078027-38078028(-) m6A 3'UTR       24981863//28052920//27773535
chr17:38078054-38078055(-) m6A 3'UTR       24209618//24981863//28052920//27773535
chr17:38078087-38078088(-) m6A 3'UTR       24209618//24981863//28052920//27773535
chr17:38078466-38078467(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr17:38078499-38078500(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:38078505-38078506(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:38078549-38078550(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:38078707-38078708(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:38078728-38078729(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr17:38079463-38079464(-) m6A CDS       27773535
chr17:38079470-38079471(-) m6A CDS       27773535
chr17:38079482-38079483(-) m6A CDS       27773535
chr17:38080308-38080309(-) m6A CDS//intron       27773535
chr17:38080403-38080404(-) m6A CDS       27773535
chr17:38081426-38081427(-) m6A 5'UTR//intron       -
chr17:38081445-38081446(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ORMDL3
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H14-5p
Interactor2: ORMDL3

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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