Basic Information:

  VIRBase ID:  

VHID00114876

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H14-5p:  MIMAT0014691          LINGO1:  NM_001301200     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H14-5p	LINGO1
miRBase Accession/Entrez ID	MIMAT0014691	84894
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LERN1//LRRN6A//MRT64//UNQ201

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LINGO1	chr15:77913534(-) A-I      intronic chr15:77911810(-) A-I      intronic chr15:77911967(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LINGO1	chr15:77910963(-) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LINGO1	chr15:77905614-77905615(-) m6A 3'UTR       25456834 chr15:77905639-77905640(-) m6A 3'UTR       25456834 chr15:77905646-77905647(-) m6A 3'UTR       25456834 chr15:77905737-77905738(-) m6A 3'UTR       25456834 chr15:77905861-77905862(-) m6A 3'UTR       27773535 chr15:77905985-77905986(-) m6A 3'UTR       24981863//27773535 chr15:77906014-77906015(-) m6A 3'UTR       24209618//25456834//24981863//27773535 chr15:77906040-77906041(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906086-77906087(-) m6A 3'UTR       25456834//24981863//27773535//22608085 chr15:77906129-77906130(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906150-77906151(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906177-77906178(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906185-77906186(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906200-77906201(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906364-77906365(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr15:77906582-77906583(-) m6A CDS       24209618//25456834//24981863//27773535//27773536//22608085 chr15:77906666-77906667(-) m6A CDS       24209618//25456834//24981863//27773535//27773536//22575960//22608085 chr15:77906776-77906777(-) m6A CDS       24209618//25456834//24981863//27773536//22575960//22608085 chr15:77906965-77906966(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77907022-77907023(-) m6A CDS       24209618//25456834//24981863//27773536//22608085 chr15:77907148-77907149(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77907161-77907162(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77907490-77907491(-) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr15:77907553-77907554(-) m6A CDS       25456834//24981863//27773535//22608085 chr15:77907754-77907755(-) m6A CDS       25456834//24981863//27773535//22608085 chr15:77907769-77907770(-) m6A CDS       25456834//24981863//22608085 chr15:77907790-77907791(-) m6A CDS       25456834//24981863//22608085 chr15:77907802-77907803(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77907934-77907935(-) m6A CDS       25456834//24981863//27773536//22575960//22608085 chr15:77908006-77908007(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77908018-77908019(-) m6A CDS       25456834//24981863//27773536//22608085 chr15:77908093-77908094(-) m6A CDS       27773536 chr15:77924674-77924675(-) m6A 5'UTR//intron       25456834//24981863//27773536 chr15:77924702-77924703(-) m6A 5'UTR//intron       25456834//24981863//27773536 chr15:77924786-77924787(-) m6A 5'UTR//intron       25456834//24981863//27773536 chr15:77924812-77924813(-) m6A 5'UTR//intron       25456834//27773536 chr15:77924820-77924821(-) m6A 5'UTR//intron       25456834//27773536 chr15:77926623-77926624(-) m6A CDS//intron       25456834//27773536 chr15:77926655-77926656(-) m6A 5'UTR//intron       25456834//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LINGO1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H14-5p
Interactor2: LINGO1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg