Basic Information:

  VIRBase ID:  

VHID00111781

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H13:  MIMAT0014690          TSC22D3:  NM_004089     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H13	TSC22D3
miRBase Accession/Entrez ID	MIMAT0014690	1831
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DIP//DSIPI//GILZ//TSC-22R

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSC22D3	chrX:107006255(-) A-I      intronic chrX:107006251(-) A-I      intronic chrX:107001136(-) A-I      intronic chrX:107006195(-) A-I      intronic chrX:107001209(-) A-I      intronic chrX:107002207(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSC22D3	chrX:106957269-106957270(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chrX:106957375-106957376(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:106957577-106957578(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:106957608-106957609(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:106957650-106957651(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chrX:106957713-106957714(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22575960//22608085 chrX:106957858-106957859(-) m6A CDS       24284625//24981863//27773535//27371828//27773536 chrX:106957872-106957873(-) m6A CDS       24284625//24981863//27773535//27371828//27773536 chrX:106957893-106957894(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//27773536 chrX:106957918-106957919(-) Cm CDS       - chrX:106959027-106959028(-) m6A CDS//intron       24981863//28052920//27773535//27371828//27773536 chrX:106959137-106959138(-) m6A 5'UTR//CDS       24981863 chrX:106959150-106959151(-) m6A 5'UTR//CDS       24981863 chrX:106959220-106959221(-) m6A 5'UTR//intron       24981863 chrX:106959255-106959256(-) m6A 5'UTR//intron       25456834//24981863//27773536 chrX:106959312-106959313(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085 chrX:106959326-106959327(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085 chrX:106959407-106959408(-) m6A 5'UTR//intron       27773536//22608085 chrX:106959434-106959435(-) m6A 5'UTR//intron       27773536 chrX:106959505-106959506(-) m6A 5'UTR//intron       27773536 chrX:106959528-106959529(-) m6A 5'UTR//intron       27773536 chrX:106959643-106959644(-) m6A 5'UTR//intron       25456834//27773536 chrX:106959648-106959649(-) m6A 5'UTR//intron       25456834//27773536 chrX:106959700-106959701(-) m6A 5'UTR//intron       27773536 chrX:106960019-106960020(-) m6A CDS//intron       24981863//28052920//27371828//27773536 chrX:106960036-106960037(-) m6A CDS//intron       24981863//28052920//27371828//27773536 chrX:106960071-106960072(-) m6A 5'UTR//intron       24981863//27371828//27773536 chrX:106960146-106960147(-) m6A 5'UTR//intron       24981863//27371828//27773536 chrX:106960278-106960279(-) m6A 5'UTR//intron       27371828//27773536 chrX:107018473-107018474(-) m6A 5'UTR//CDS       27773536//22608085 chrX:107018539-107018540(-) m6A CDS//intron       27371828//27773536//22608085 chrX:107018584-107018585(-) m6A CDS//intron       27371828//27773536//22608085 chrX:107018970-107018971(-) m6A 5'UTR//intron       24284625//27773536 chrX:107018977-107018978(-) m6A 5'UTR//intron       27773536 chrX:107019098-107019099(-) m6A 5'UTR//intron       27773536 chrX:107019184-107019185(-) m6A 5'UTR//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TSC22D3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H13
Interactor2: TSC22D3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg