Basic Information:

  VIRBase ID:  

VHID00111318

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H12:  MIMAT0014689          LRSAM1:  NR_168891     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H12	LRSAM1
miRBase Accession/Entrez ID	MIMAT0014689	90678
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMT2P//RIFLE//TAL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRSAM1	chr9:130229100(+) A-I      intronic chr9:130233508(+) A-I      intronic chr9:130227009(+) A-I      intronic chr9:130262115(+) A-I      intronic chr9:130257249(+) A-I      intronic chr9:130257024(+) A-I      intronic chr9:130257003(+) A-I      intronic chr9:130256998(+) A-I      intronic chr9:130255577(+) A-I      intronic chr9:130255550(+) A-I      intronic chr9:130255372(+) A-I      intronic chr9:130220841(+) A-I      intronic chr9:130220774(+) A-I      intronic chr9:130220771(+) A-I      intronic chr9:130226966(+) A-I      intronic chr9:130225246(+) A-I      intronic chr9:130247581(+) A-I      intronic chr9:130246083(+) A-I      intronic chr9:130246043(+) A-I      intronic chr9:130246036(+) A-I      intronic chr9:130244619(+) A-I      intronic chr9:130247626(+) A-I      intronic chr9:130244571(+) A-I      intronic chr9:130240277(+) A-I      intronic chr9:130239849(+) A-I      intronic chr9:130239186(+) A-I      intronic chr9:130239099(+) A-I      intronic chr9:130239090(+) A-I      intronic chr9:130239083(+) A-I      intronic chr9:130239058(+) A-I      intronic chr9:130239057(+) A-I      intronic chr9:130239054(+) A-I      intronic chr9:130239047(+) A-I      intronic chr9:130239034(+) A-I      intronic chr9:130238978(+) A-I      intronic chr9:130238688(+) A-I      intronic chr9:130238216(+) A-I      intronic chr9:130238199(+) A-I      intronic chr9:130228368(+) A-I      intronic chr9:130228387(+) A-I      intronic chr9:130233865(+) A-I      intronic chr9:130233890(+) A-I      intronic chr9:130238769(+) A-I      intronic chr9:130238773(+) A-I      intronic chr9:130238807(+) A-I      intronic chr9:130238810(+) A-I      intronic chr9:130238813(+) A-I      intronic chr9:130257016(+) A-I      intronic chr9:130257027(+) A-I      intronic chr9:130257066(+) A-I      intronic chr9:130257085(+) A-I      intronic chr9:130238099(+) A-I      intronic chr9:130234845(+) A-I      intronic chr9:130234840(+) A-I      intronic chr9:130234826(+) A-I      intronic chr9:130234441(+) A-I      intronic chr9:130233955(+) A-I      intronic chr9:130233589(+) A-I      intronic chr9:130255360(+) A-I      intronic chr9:130228332(+) A-I      intronic chr9:130227161(+) A-I      intronic chr9:130227156(+) A-I      intronic chr9:130227122(+) A-I      intronic chr9:130233901(+) A-I      intronic chr9:130233702(+) A-I      intronic chr9:130227119(+) A-I      intronic chr9:130227048(+) A-I      intronic chr9:130227047(+) A-I      intronic chr9:130227008(+) A-I      intronic chr9:130226987(+) A-I      intronic chr9:130221760(+) A-I      intronic chr9:130227107(+) A-I      intronic chr9:130233710(+) A-I      intronic chr9:130227143(+) A-I      intronic chr9:130228352(+) A-I      intronic chr9:130256973(+) A-I      ncRNA chr9:130228378(+) A-I      intronic chr9:130228386(+) A-I      intronic chr9:130228441(+) A-I      intronic chr9:130228484(+) A-I      intronic chr9:130228529(+) A-I      intronic chr9:130225243(+) A-I      intronic chr9:130227002(+) A-I      intronic chr9:130257466(+) A-I      intronic chr9:130222292(+) A-I      intronic chr9:130225399(+) A-I      intronic chr9:130238783(+) A-I      intronic chr9:130257103(+) A-I      intronic chr9:130257062(+) A-I      intronic chr9:130229077(+) A-I      intronic chr9:130229024(+) A-I      intronic chr9:130247287(+) A-I      intronic chr9:130256984(+) A-I      intronic chr9:130257097(+) A-I      intronic chr9:130227088(+) A-I      intronic chr9:130238747(+) A-I      intronic chr9:130226954(+) A-I      intronic chr9:130237612(+) A-I      intronic chr9:130237588(+) A-I      intronic chr9:130261257(+) A-I      intronic chr9:130231026(+) A-I      intronic chr9:130233679(+) A-I      intronic chr9:130229202(+) A-I      intronic chr9:130234127(+) A-I      intronic chr9:130234696(+) A-I      intronic chr9:130246142(+) A-I      intronic chr9:130227144(+) A-I      intronic chr9:130257093(+) A-I      intronic chr9:130234340(+) A-I      intronic chr9:130229030(+) A-I      intronic chr9:130229201(+) A-I      intronic chr9:130236664(+) A-I      intronic chr9:130244191(+) A-I      intronic chr9:130257047(+) A-I      intronic chr9:130239120(+) A-I      intronic chr9:130257068(+) A-I      intronic chr9:130229036(+) A-I      intronic chr9:130234125(+) A-I      intronic chr9:130225356(+) A-I      intronic chr9:130240278(+) A-I      intronic chr9:130257037(+) A-I      intronic chr9:130227157(+) A-I      intronic chr9:130228325(+) A-I      intronic chr9:130256968(+) A-I      ncRNA chr9:130229175(+) A-I      intronic chr9:130228854(+) A-I      intronic chr9:130257471(+) A-I      intronic chr9:130225428(+) A-I      intronic chr9:130218784(+) A-I      intronic chr9:130238159(+) A-I      intronic chr9:130257410(+) A-I      intronic chr9:130238976(+) A-I      intronic chr9:130247582(+) A-I      intronic chr9:130231062(+) A-I      intronic chr9:130238729(+) A-I      intronic chr9:130245996(+) A-I      intronic chr9:130234318(+) A-I      intronic chr9:130233509(+) A-I      intronic chr9:130225374(+) A-I      intronic chr9:130240151(+) A-I      intronic chr9:130247715(+) A-I      intronic chr9:130239850(+) A-I      intronic chr9:130226946(+) A-I      intronic chr9:130225430(+) A-I      intronic chr9:130239872(+) A-I      intronic chr9:130257046(+) A-I      intronic chr9:130218762(+) A-I      intronic chr9:130233573(+) A-I      intronic chr9:130239093(+) A-I      intronic chr9:130239156(+) A-I      intronic chr9:130238228(+) A-I      intronic chr9:130227112(+) A-I      intronic chr9:130244605(+) A-I      intronic chr9:130246828(+) A-I      intronic chr9:130239846(+) A-I      intronic chr9:130244156(+) A-I      intronic chr9:130246075(+) A-I      intronic chr9:130257077(+) A-I      intronic chr9:130239796(+) A-I      intronic chr9:130257370(+) A-I      intronic chr9:130233824(+) A-I      intronic chr9:130234797(+) A-I      intronic chr9:130239208(+) A-I      intronic chr9:130228894(+) A-I      intronic chr9:130238084(+) A-I      intronic chr9:130236633(+) A-I      intronic chr9:130228467(+) A-I      intronic chr9:130229085(+) A-I      intronic chr9:130228866(+) A-I      intronic chr9:130257143(+) A-I      intronic chr9:130218613(+) A-I      intronic chr9:130239153(+) A-I      intronic chr9:130233895(+) A-I      intronic chr9:130234502(+) A-I      intronic chr9:130231005(+) A-I      intronic chr9:130233525(+) A-I      intronic chr9:130257413(+) A-I      intronic chr9:130239974(+) A-I      intronic chr9:130234266(+) A-I      intronic chr9:130233676(+) A-I      intronic chr9:130234131(+) A-I      intronic chr9:130238823(+) A-I      intronic chr9:130234666(+) A-I      intronic chr9:130236626(+) A-I      intronic chr9:130227105(+) A-I      intronic chr9:130228912(+) A-I      intronic chr9:130233592(+) A-I      intronic chr9:130233652(+) A-I      intronic chr9:130257065(+) A-I      intronic chr9:130229107(+) A-I      intronic chr9:130239908(+) A-I      intronic chr9:130234262(+) A-I      intronic chr9:130238746(+) A-I      intronic chr9:130234216(+) A-I      intronic chr9:130234341(+) A-I      intronic chr9:130257073(+) A-I      intronic chr9:130257360(+) A-I      intronic chr9:130257151(+) A-I      intronic chr9:130222529(+) A-I      intronic chr9:130225329(+) A-I      intronic chr9:130244674(+) A-I      intronic chr9:130236616(+) A-I      intronic chr9:130247673(+) A-I      intronic chr9:130229037(+) A-I      intronic chr9:130228350(+) A-I      intronic chr9:130238202(+) A-I      intronic chr9:130256967(+) A-I      ncRNA chr9:130234126(+) A-I      intronic chr9:130238690(+) A-I      intronic chr9:130257348(+) A-I      intronic chr9:130234122(+) A-I      intronic chr9:130239944(+) A-I      intronic chr9:130227087(+) A-I      intronic chr9:130233581(+) A-I      intronic chr9:130229021(+) A-I      intronic chr9:130233905(+) A-I      intronic chr9:130247725(+) A-I      intronic chr9:130238778(+) A-I      intronic chr9:130238161(+) A-I      intronic chr9:130227160(+) A-I      intronic chr9:130238137(+) A-I      intronic chr9:130225384(+) A-I      intronic chr9:130233919(+) A-I      intronic chr9:130227023(+) A-I      intronic chr9:130238120(+) A-I      intronic chr9:130234783(+) A-I      intronic chr9:130219100(+) A-I      intronic chr9:130236632(+) A-I      intronic chr9:130244063(+) A-I      intronic chr9:130240069(+) A-I      intronic chr9:130222551(+) A-I      intronic chr9:130234513(+) A-I      intronic chr9:130227061(+) A-I      intronic chr9:130231493(+) A-I      intronic chr9:130233819(+) A-I      intronic chr9:130234185(+) A-I      intronic chr9:130256951(+) A-I      ncRNA chr9:130257396(+) A-I      intronic chr9:130234756(+) A-I      intronic chr9:130247677(+) A-I      intronic chr9:130239071(+) A-I      intronic chr9:130222021(+) A-I      intronic chr9:130234204(+) A-I      intronic chr9:130233978(+) A-I      intronic chr9:130234219(+) A-I      intronic chr9:130228465(+) A-I      intronic chr9:130239954(+) A-I      intronic chr9:130227063(+) A-I      intronic chr9:130257064(+) A-I      intronic chr9:130218576(+) A-I      intronic chr9:130239139(+) A-I      intronic chr9:130234687(+) A-I      intronic chr9:130225423(+) A-I      intronic chr9:130244684(+) A-I      intronic chr9:130234915(+) A-I      intronic chr9:130257063(+) A-I      intronic chr9:130257013(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRSAM1	chr9:130225423(+) A-I intron -    22327324 chr9:130229201(+) A-I intron -    22327324 chr9:130225329(+) A-G intron -    22484847 chr9:130225355(+) A-G intron -    22484847 chr9:130225356(+) A-G intron -    22484847 chr9:130225365(+) A-G intron -    22484847 chr9:130225423(+) A-G intron -    22484847 chr9:130226973(+) A-G intron -    22484847 chr9:130227142(+) A-G intron -    22484847 chr9:130227157(+) A-G intron -    22484847 chr9:130227182(+) A-G intron -    22484847 chr9:130228325(+) A-G intron -    22484847 chr9:130228509(+) A-G intron -    22484847 chr9:130229021(+) A-G intron -    22484847 chr9:130229030(+) A-G intron -    22484847 chr9:130229107(+) A-G intron -    22484847 chr9:130229121(+) A-G intron -    22484847 chr9:130229201(+) A-G intron -    22484847 chr9:130229202(+) A-G intron -    22484847 chr9:130233676(+) A-G intron -    22484847 chr9:130237591(+) A-G intron -    22484847 chr9:130257068(+) A-G intron -    22484847 chr9:130257077(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRSAM1	chr9:130216060-130216061(+) m6A exon//intron       24284625//25456834 chr9:130216094-130216095(+) m6A exon//intron       24284625//25456834 chr9:130216108-130216109(+) m6A exon//intron       24284625//25456834 chr9:130216174-130216175(+) m6A exon//intron       24284625//25456834 chr9:130216209-130216210(+) m6A exon//intron       24284625//25456834 chr9:130216219-130216220(+) m6A exon//intron       24284625//25456834 chr9:130216250-130216251(+) m6A exon//intron       24284625//25456834 chr9:130216263-130216264(+) m6A exon//intron       24284625//25456834 chr9:130216285-130216286(+) m6A exon//intron       24284625 chr9:130216832-130216833(+) m6A CDS//exon       24284625 chr9:130236148-130236149(+) m6A CDS       - chr9:130236157-130236158(+) m6A CDS       - chr9:130236178-130236179(+) m6A CDS       - chr9:130241225-130241226(+) m6A CDS//exon       - chr9:130241663-130241664(+) m6A CDS//exon       - chr9:130241681-130241682(+) m6A CDS//exon       - chr9:130241705-130241706(+) m6A CDS//exon       - chr9:130242209-130242210(+) m6A CDS//exon       - chr9:130242214-130242215(+) m6A CDS//exon       - chr9:130242247-130242248(+) m6A CDS//exon       - chr9:130257622-130257623(+) m6A CDS//exon//intron       - chr9:130258336-130258337(+) m6A CDS//exon       - chr9:130258363-130258364(+) m6A CDS//exon       - chr9:130259584-130259585(+) m6A CDS//exon       - chr9:130265263-130265264(+) m6A 3'UTR//exon       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRSAM1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H12
Interactor2: LRSAM1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg