Detail Information

Basic Information:


  VIRBase ID:  

VHID00111028

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H12:           CHTF8:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H12 CHTF8
miRBase
Accession/Entrez ID		 MIMAT0014689 54921
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - CTF8//DERPC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHTF8
chr16:69156638(-) A-I      intronic
chr16:69157080(-) A-I      intronic
chr16:69157083(-) A-I      intronic
chr16:69161755(-) A-I      intronic
chr16:69161764(-) A-I      intronic
chr16:69161982(-) A-I      intronic
chr16:69161987(-) A-I      intronic
chr16:69161988(-) A-I      intronic
chr16:69161994(-) A-I      intronic
chr16:69156920(-) A-I      intronic
chr16:69156913(-) A-I      intronic
chr16:69156855(-) A-I      intronic
chr16:69156814(-) A-I      intronic
chr16:69156623(-) A-I      intronic
chr16:69156613(-) A-I      intronic
chr16:69156612(-) A-I      intronic
chr16:69156605(-) A-I      intronic
chr16:69156601(-) A-I      intronic
chr16:69156576(-) A-I      intronic
chr16:69156540(-) A-I      intronic
chr16:69156432(-) A-I      intronic
chr16:69155930(-) A-I      intronic
chr16:69157416(-) A-I      intronic
chr16:69162019(-) A-I      intronic
chr16:69162769(-) A-I      intronic
chr16:69162921(-) A-I      intronic
chr16:69162011(-) A-I      intronic
chr16:69161885(-) A-I      intronic
chr16:69161804(-) A-I      intronic
chr16:69161780(-) A-I      intronic
chr16:69161686(-) A-I      intronic
chr16:69161681(-) A-I      intronic
chr16:69161054(-) A-I      intronic
chr16:69161032(-) A-I      intronic
chr16:69161029(-) A-I      intronic
chr16:69161019(-) A-I      intronic
chr16:69160938(-) A-I      intronic
chr16:69160933(-) A-I      intronic
chr16:69160887(-) A-I      intronic
chr16:69159001(-) A-I      intronic
chr16:69158984(-) A-I      intronic
chr16:69158873(-) A-I      intronic
chr16:69158843(-) A-I      intronic
chr16:69158459(-) A-I      intronic
chr16:69158451(-) A-I      intronic
chr16:69157477(-) A-I      intronic
chr16:69157450(-) A-I      intronic
chr16:69157448(-) A-I      intronic
chr16:69157420(-) A-I      intronic
chr16:69157412(-) A-I      intronic
chr16:69157411(-) A-I      intronic
chr16:69157326(-) A-I      intronic
chr16:69156951(-) A-I      intronic
chr16:69161956(-) A-I      intronic
chr16:69160947(-) A-I      intronic
chr16:69156718(-) A-I      intronic
chr16:69156558(-) A-I      intronic
chr16:69157547(-) A-I      intronic
chr16:69162798(-) A-I      intronic
chr16:69158875(-) A-I      intronic
chr16:69161588(-) A-I      intronic
chr16:69160945(-) A-I      intronic
chr16:69162965(-) A-I      intronic
chr16:69155660(-) A-I      intronic
chr16:69157465(-) A-I      intronic
chr16:69157045(-) A-I      intronic
chr16:69161786(-) A-I      intronic
chr16:69162958(-) A-I      intronic
chr16:69161094(-) A-I      intronic
chr16:69158424(-) A-I      intronic
chr16:69158455(-) A-I      intronic
chr16:69158464(-) A-I      intronic
chr16:69162012(-) A-I      intronic
chr16:69160893(-) A-I      intronic
chr16:69156672(-) A-I      intronic
chr16:69160906(-) A-I      intronic
chr16:69161641(-) A-I      intronic
chr16:69159044(-) A-I      intronic
chr16:69162884(-) A-I      intronic
chr16:69160984(-) A-I      intronic
chr16:69161058(-) A-I      intronic
chr16:69160920(-) A-I      intronic
chr16:69162089(-) A-I      intronic
chr16:69159096(-) A-I      intronic
chr16:69158389(-) A-I      intronic
chr16:69155910(-) A-I      intronic
chr16:69156364(-) A-I      intronic
chr16:69162936(-) A-I      intronic
chr16:69161955(-) A-I      intronic
chr16:69160992(-) A-I      intronic
chr16:69161785(-) A-I      intronic
chr16:69160975(-) A-I      intronic
chr16:69157380(-) A-I      intronic
chr16:69156413(-) A-I      intronic
chr16:69162855(-) A-I      intronic
chr16:69162774(-) A-I      intronic
chr16:69155909(-) A-I      intronic
chr16:69157950(-) A-I      intronic
chr16:69162037(-) A-I      intronic
chr16:69162762(-) A-I      intronic
chr16:69158913(-) A-I      intronic
chr16:69157098(-) A-I      intronic
chr16:69157895(-) A-I      intronic
chr16:69157058(-) A-I      intronic
chr16:69159087(-) A-I      intronic
chr16:69161966(-) A-I      intronic
chr16:69161995(-) A-I      intronic
chr16:69161714(-) A-I      intronic
chr16:69158550(-) A-I      intronic
chr16:69158677(-) A-I      intronic
chr16:69156695(-) A-I      intronic
chr16:69158980(-) A-I      intronic
chr16:69158515(-) A-I      intronic
chr16:69162880(-) A-I      intronic
chr16:69161716(-) A-I      intronic
chr16:69156627(-) A-I      intronic
chr16:69162763(-) A-I      intronic
chr16:69158919(-) A-I      intronic
chr16:69156937(-) A-I      intronic
chr16:69155509(-) A-I      intronic
chr16:69161089(-) A-I      intronic
chr16:69156694(-) A-I      intronic
chr16:69162088(-) A-I      intronic
chr16:69158945(-) A-I      intronic
chr16:69158416(-) A-I      intronic
chr16:69158972(-) A-I      intronic
chr16:69157899(-) A-I      intronic
chr16:69156310(-) A-I      intronic
chr16:69156581(-) A-I      intronic
chr16:69156890(-) A-I      intronic
chr16:69156677(-) A-I      intronic
chr16:69158394(-) A-I      intronic
chr16:69157460(-) A-I      intronic
chr16:69155550(-) A-I      intronic
chr16:69161651(-) A-I      intronic
chr16:69161779(-) A-I      intronic
chr16:69162000(-) A-I      intronic
chr16:69158948(-) A-I      intronic
chr16:69158946(-) A-I      intronic
chr16:69156609(-) A-I      intronic
chr16:69158448(-) A-I      intronic
chr16:69156582(-) A-I      intronic
chr16:69156806(-) A-I      intronic
chr16:69158423(-) A-I      intronic
chr16:69161991(-) A-I      intronic
chr16:69157955(-) A-I      intronic
chr16:69157091(-) A-I      intronic
chr16:69161763(-) A-I      intronic
chr16:69157097(-) A-I      intronic
chr16:69159095(-) A-I      intronic
chr16:69157342(-) A-I      intronic
chr16:69158437(-) A-I      intronic
chr16:69161946(-) A-I      intronic
chr16:69156348(-) A-I      intronic
chr16:69156676(-) A-I      intronic
chr16:69159039(-) A-I      intronic
chr16:69157931(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CHTF8
chr16:69157460(-) A-G intron -    22484847
chr16:69157465(-) A-G intron -    22484847
chr16:69157955(-) A-G intron -    22484847
chr16:69158948(-) A-G intron -    22484847
chr16:69162884(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHTF8
chr16:69152066-69152067(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:69152080-69152081(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:69152156-69152157(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:69152213-69152214(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152232-69152233(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152244-69152245(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152251-69152252(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152294-69152295(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152329-69152330(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69152439-69152440(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr16:69152567-69152568(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//22608085
chr16:69152654-69152655(-) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//22608085
chr16:69152736-69152737(-) m6A 3'UTR//intron       24284625
chr16:69152755-69152756(-) m6A 3'UTR//intron       24284625
chr16:69153189-69153190(-) m6A 3'UTR//CDS//intron       24284625
chr16:69153934-69153935(-) m6A 3'UTR//CDS//intron       24284625
chr16:69153942-69153943(-) m6A 3'UTR//CDS//intron       24284625
chr16:69154128-69154129(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69154191-69154192(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69154215-69154216(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69154238-69154239(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69154285-69154286(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69154322-69154323(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:69154371-69154372(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:69154388-69154389(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:69154425-69154426(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69154448-69154449(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69154468-69154469(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:69154489-69154490(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:69154583-69154584(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chr16:69154661-69154662(-) m6A 3'UTR//intron       24284625//24209618
chr16:69154885-69154886(-) m6A CDS//intron       24284625
chr16:69154974-69154975(-) m6A CDS//intron       24284625//24209618
chr16:69154986-69154987(-) m6A CDS//intron       24284625//24209618
chr16:69155371-69155372(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863
chr16:69165904-69165905(-) Am intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHTF8
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H12
Interactor2: CHTF8

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

Starting a new search, please wait ...