Basic Information:

  VIRBase ID:  

VHID00109684

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H11:  MIMAT0014688          MSANTD4:  NM_001318748     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H11	MSANTD4
miRBase Accession/Entrez ID	MIMAT0014688	84437
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KIAA1826

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MSANTD4	chr11:105877628(-) A-I      intronic chr11:105876178(-) A-I      intronic chr11:105876221(-) A-I      intronic chr11:105877206(-) A-I      intronic chr11:105876291(-) A-I      intronic chr11:105877281(-) A-I      intronic chr11:105877286(-) A-I      intronic chr11:105877315(-) A-I      intronic chr11:105877323(-) A-I      intronic chr11:105877307(-) A-I      intronic chr11:105877476(-) A-I      intronic chr11:105877353(-) A-I      intronic chr11:105877522(-) A-I      intronic chr11:105877569(-) A-I      intronic chr11:105877526(-) A-I      intronic chr11:105877641(-) A-I      intronic chr11:105877411(-) A-I      intronic chr11:105877339(-) A-I      intronic chr11:105877652(-) A-I      intronic chr11:105877678(-) A-I      intronic chr11:105876377(-) A-I      intronic chr11:105877506(-) A-I      intronic chr11:105877663(-) A-I      intronic chr11:105877388(-) A-I      intronic chr11:105877588(-) A-I      intronic chr11:105877700(-) A-I      intronic chr11:105876257(-) A-I      intronic chr11:105877284(-) A-I      intronic chr11:105876165(-) A-I      intronic chr11:105877406(-) A-I      intronic chr11:105877129(-) A-I      intronic chr11:105877174(-) A-I      intronic chr11:105877459(-) A-I      intronic chr11:105877303(-) A-I      intronic chr11:105877324(-) A-I      intronic chr11:105877428(-) A-I      intronic chr11:105877623(-) A-I      intronic chr11:105876131(-) A-I      intronic chr11:105876231(-) A-I      intronic chr11:105886844(-) A-I      intronic chr11:105877446(-) A-I      intronic chr11:105877370(-) A-I      intronic chr11:105877683(-) A-I      intronic chr11:105876369(-) A-I      intronic chr11:105877263(-) A-I      intronic chr11:105877194(-) A-I      intronic chr11:105877364(-) A-I      intronic chr11:105886749(-) A-I      intronic chr11:105877229(-) A-I      intronic chr11:105877598(-) A-I      intronic chr11:105877707(-) A-I      intronic chr11:105877272(-) A-I      intronic chr11:105877687(-) A-I      intronic chr11:105876368(-) A-I      intronic chr11:105877695(-) A-I      intronic chr11:105877620(-) A-I      intronic chr11:105877285(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MSANTD4	chr11:105866740-105866741(-) m6A exon       - chr11:105866941-105866942(-) m6A exon       - chr11:105866963-105866964(-) m6A exon       22608085 chr11:105867236-105867237(-) m6A exon       22608085 chr11:105867259-105867260(-) m6A exon       24981863//22608085 chr11:105867335-105867336(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880065-105880066(-) m6A 3'UTR//intron       27773535 chr11:105880079-105880080(-) m6A 3'UTR//intron       27773535 chr11:105880226-105880227(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880273-105880274(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:105880298-105880299(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:105880402-105880403(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:105880416-105880417(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:105880424-105880425(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:105880462-105880463(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:105880480-105880481(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:105880561-105880562(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880568-105880569(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880666-105880667(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880672-105880673(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr11:105880771-105880772(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:105881445-105881446(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:105881451-105881452(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:105881458-105881459(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:105881589-105881590(-) m6A CDS       24284625//24981863//27773535//22608085 chr11:105881595-105881596(-) m6A CDS       24284625//24981863//27773535//22608085 chr11:105881661-105881662(-) m6A 5'UTR       24284625//24981863//27773535//22608085 chr11:105881743-105881744(-) m6A 5'UTR       24284625//24981863//27773535//22608085 chr11:105881755-105881756(-) m6A 5'UTR       24284625//24981863//27773535//22608085 chr11:105881782-105881783(-) m6A 5'UTR       24284625//24981863//27773535//22608085 chr11:105891718-105891719(-) m6A 5'UTR//intron       24981863//22608085 chr11:105891726-105891727(-) m6A 5'UTR//intron       24981863//22608085 chr11:105891769-105891770(-) m6A 5'UTR//intron       27773535 chr11:105892601-105892602(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085 chr11:105892659-105892660(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:105892689-105892690(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:105892694-105892695(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:105892769-105892770(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MSANTD4	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H11
Interactor2: MSANTD4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg