Basic Information:

  VIRBase ID:  

VHID00109543

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H11:  MIMAT0014688          ATP13A3:  NM_024524     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H11	ATP13A3
miRBase Accession/Entrez ID	MIMAT0014688	79572
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AFURS1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATP13A3	chr3:194192271(-) A-I      intronic chr3:194138638(-) A-I      intronic chr3:194184723(-) A-I      intronic chr3:194184807(-) A-I      intronic chr3:194203068(-) A-I      intronic chr3:194203072(-) A-I      intronic chr3:194203445(-) A-I      intronic chr3:194203736(-) A-I      intronic chr3:194204062(-) A-I      intronic chr3:194204068(-) A-I      intronic chr3:194204098(-) A-I      intronic chr3:194185619(-) A-I      intronic chr3:194187497(-) A-I      intronic chr3:194192180(-) A-I      intronic chr3:194192207(-) A-I      intronic chr3:194192227(-) A-I      intronic chr3:194192231(-) A-I      intronic chr3:194192276(-) A-I      intronic chr3:194203029(-) A-I      intronic chr3:194203049(-) A-I      intronic chr3:194129045(-) A-I      intronic chr3:194205678(-) A-I      intronic chr3:194127024(-) A-I      intronic chr3:194204219(-) A-I      intronic chr3:194184790(-) A-I      intronic chr3:194175367(-) A-I      intronic chr3:194203054(-) A-I      intronic chr3:194205540(-) A-I      intronic chr3:194190175(-) A-I      intronic chr3:194185524(-) A-I      intronic chr3:194203484(-) A-I      intronic chr3:194205528(-) A-I      intronic chr3:194159495(-) A-I      intronic chr3:194129023(-) A-I      intronic chr3:194178691(-) A-I      intronic chr3:194192260(-) A-I      intronic chr3:194186628(-) A-I      intronic chr3:194178675(-) A-I      intronic chr3:194205617(-) A-I      intronic chr3:194192369(-) A-I      intronic chr3:194127021(-) A-I      intronic chr3:194129022(-) A-I      intronic chr3:194148795(-) A-I      intronic chr3:194190071(-) A-I      intronic chr3:194179211(-) A-I      intronic chr3:194189763(-) A-I      intronic chr3:194192325(-) A-I      intronic chr3:194192193(-) A-I      intronic chr3:194192159(-) A-I      intronic chr3:194192282(-) A-I      intronic chr3:194189755(-) A-I      intronic chr3:194184724(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATP13A3	chr3:194129045(-) A-I intron -    21960545   //22327324 chr3:194129022(-) A-I intron -    21960545 chr3:194129023(-) A-I intron -    21960545 chr3:194155235(-) A-C intron -    22484847 chr3:194129022(-) A-G intron -    22484847 chr3:194129023(-) A-G intron -    22484847 chr3:194129045(-) A-G intron -    22484847 chr3:194142281(-) G-T intron -    22484847 chr3:194179237(-) T-C intron -    22484847 chr3:194184724(-) A-G intron -    22484847 chr3:194184790(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATP13A3	chr3:194125092-194125093(-) m6A 3'UTR//exon//intron       26404942 chr3:194125124-194125125(-) m6A 3'UTR//exon//intron       26404942 chr3:194125252-194125253(-) m6A 3'UTR//exon//intron       26404942 chr3:194125261-194125262(-) m6A 3'UTR//exon//intron       26404942 chr3:194126490-194126491(-) m6A 3'UTR//exon//intron       26404942 chr3:194180680-194180681(-) Y CDS       26075521 chr3:194182908-194182909(-) Am CDS       - chr3:194214877-194214878(-) m6A 5'UTR       - chr3:194214908-194214909(-) m6A 5'UTR       - chr3:194218177-194218178(-) m6A intron       24209618 chr3:194218221-194218222(-) m6A intron       24209618 chr3:194218553-194218554(-) m6A intron       24209618 chr3:194218581-194218582(-) m6A 5'UTR       24209618 chr3:194218728-194218729(-) m6A 5'UTR       24209618 chr3:194218782-194218783(-) m6A 5'UTR       24209618 chr3:194218846-194218847(-) m6A 5'UTR       24209618 chr3:194218925-194218926(-) m6A 5'UTR       24209618 chr3:194219061-194219062(-) m6A 5'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATP13A3	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H11
Interactor2: ATP13A3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg