Basic Information:

  VIRBase ID:  

VHID00109295

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H11:  MIMAT0014688          RIOK2:  NM_001159749     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H11	RIOK2
miRBase Accession/Entrez ID	MIMAT0014688	55781
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RIO2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RIOK2	chr5:96499795(-) A-I      intronic chr5:96499721(-) A-I      intronic chr5:96499823(-) A-I      intronic chr5:96499729(-) A-I      intronic chr5:96499761(-) A-I      intronic chr5:96499809(-) A-I      intronic chr5:96499820(-) A-I      intronic chr5:96499822(-) A-I      intronic chr5:96499846(-) A-I      intronic chr5:96499847(-) A-I      intronic chr5:96499876(-) A-I      intronic chr5:96500083(-) A-I      intronic chr5:96500093(-) A-I      intronic chr5:96512076(-) A-I      intronic chr5:96500122(-) A-I      intronic chr5:96500123(-) A-I      intronic chr5:96499668(-) A-I      intronic chr5:96510755(-) A-I      intronic chr5:96512183(-) A-I      intronic chr5:96512184(-) A-I      intronic chr5:96512315(-) A-I      intronic chr5:96512216(-) A-I      intronic chr5:96499773(-) A-I      intronic chr5:96499767(-) A-I      intronic chr5:96499704(-) A-I      intronic chr5:96499705(-) A-I      intronic chr5:96499712(-) A-I      intronic chr5:96499725(-) A-I      intronic chr5:96499669(-) A-I      intronic chr5:96499699(-) A-I      intronic chr5:96500118(-) A-I      intronic chr5:96512152(-) A-I      intronic chr5:96500119(-) A-I      intronic chr5:96499765(-) A-I      intronic chr5:96499735(-) A-I      intronic chr5:96512153(-) A-I      intronic chr5:96512160(-) A-I      intronic chr5:96510748(-) A-I      intronic chr5:96512148(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RIOK2	chr5:96496573-96496574(-) m6A 3'UTR       27773535 chr5:96496586-96496587(-) m6A 3'UTR       27773535 chr5:96496644-96496645(-) m6A 3'UTR       27773535 chr5:96498816-96498817(-) m6A CDS       27773535 chr5:96498890-96498891(-) m6A CDS       27773535 chr5:96498917-96498918(-) m6A CDS       27773535 chr5:96498926-96498927(-) m6A CDS       27773535 chr5:96500681-96500682(-) m6A 3'UTR//intron       27773535 chr5:96500807-96500808(-) m6A CDS       27773535 chr5:96500813-96500814(-) m6A CDS       27773535 chr5:96502032-96502033(-) m6A CDS//intron       27773535 chr5:96502478-96502479(-) m6A 3'UTR//intron       27773535 chr5:96503163-96503164(-) m6A CDS//intron       27773535//22608085 chr5:96503300-96503301(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:96503305-96503306(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:96503338-96503339(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:96503431-96503432(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503445-96503446(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503452-96503453(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503497-96503498(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503585-96503586(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503625-96503626(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:96503686-96503687(-) m6A CDS       24284625//24981863//27773535//22608085 chr5:96518821-96518822(-) m6A CDS//intron       24981863 chr5:96518906-96518907(-) m6A 5'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RIOK2	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H11
Interactor2: RIOK2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg