Basic Information:

  VIRBase ID:  

VHID00106159

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          PTAR1:  NM_001366937     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	PTAR1
miRBase Accession/Entrez ID	MIMAT0012597	375743
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PTAR1	chr9:72351373(-) A-I      intronic chr9:72352098(-) A-I      intronic chr9:72351307(-) A-I      intronic chr9:72351310(-) A-I      intronic chr9:72352264(-) A-I      intronic chr9:72352292(-) A-I      intronic chr9:72352156(-) A-I      intronic chr9:72351300(-) A-I      intronic chr9:72352173(-) A-I      intronic chr9:72352175(-) A-I      intronic chr9:72352261(-) A-I      intronic chr9:72352270(-) A-I      intronic chr9:72351299(-) A-I      intronic chr9:72352061(-) A-I      intronic chr9:72352081(-) A-I      intronic chr9:72352278(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PTAR1	chr9:72333042-72333043(-) m6A 3'UTR       27773535 chr9:72333378-72333379(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr9:72333409-72333410(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:72333446-72333447(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr9:72333511-72333512(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:72333525-72333526(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr9:72338257-72338258(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr9:72338264-72338265(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr9:72338339-72338340(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr9:72338427-72338428(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:72338437-72338438(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr9:72338490-72338491(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:72338516-72338517(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:72338531-72338532(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr9:72346905-72346906(-) m6A exon//intron       24284625//27773535 chr9:72372047-72372048(-) m6A 3'UTR//intron       24981863 chr9:72373004-72373005(-) m6A 3'UTR//intron       27773535 chr9:72373042-72373043(-) m6A 3'UTR//intron       24981863//27773535 chr9:72373053-72373054(-) m6A 3'UTR//intron       24981863//27773535 chr9:72373088-72373089(-) m6A 3'UTR//intron       24981863//27773535 chr9:72373141-72373142(-) m6A 3'UTR//intron       27773535 chr9:72373170-72373171(-) m6A 3'UTR//intron       27773535 chr9:72373285-72373286(-) m6A 3'UTR//intron       24981863//27773535 chr9:72373508-72373509(-) m6A 3'UTR//intron       27773535 chr9:72373525-72373526(-) m6A 3'UTR//intron       27773535 chr9:72373530-72373531(-) m6A 3'UTR//intron       27773535 chr9:72373605-72373606(-) m6A 3'UTR//intron       27773535 chr9:72374777-72374778(-) m6A CDS//exon       24981863//27773535 chr9:72374801-72374802(-) m6A CDS//exon       24981863 chr9:72374844-72374845(-) m6A CDS//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PTAR1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: PTAR1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg